Evidence map›Paper›PMID 31852831›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2020

Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma.

Rachael A Vaubel, Shulan Tian, Dioval Remonde, Mark A Schroeder, Ann C Mladek, Gaspar J Kitange, Alissa Caron, Thomas M Kollmeyer, Rebecca Grove, Sen Peng and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 171 papers.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed, 229 citations in OpenAlex.

  1. Article
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  4. NAR cancer · 2026
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  9. Mechanisms, Microenvironments, and Models: Understanding Therapeutic Resistance in Glioblastoma.International journal of radiation oncology, biology, physics · 2026
    Review
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111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 8 institutions in 2 countries.

Rachael A Vaubel *Mayo Clinic, Rochester, Minnesota.ORCID 0000-0001-8842-5975
Shulan Tian *Mayo Clinic, Rochester, Minnesota.
Dioval RemondeBrody School of Medicine at East Carolina University, Greenville, North Carolina.ORCID 0000-0001-7173-3904
Mark A SchroederMayo Clinic, Rochester, Minnesota.
Ann C MladekMayo Clinic, Rochester, Minnesota.
Gaspar J KitangeMayo Clinic, Rochester, Minnesota.
Alissa CaronMayo Clinic, Rochester, Minnesota.
Thomas M KollmeyerMayo Clinic, Rochester, Minnesota.
Rebecca GroveMayo Clinic, Rochester, Minnesota.
Sen PengTranslational Genomics Research Institute, Phoenix, Arizona.
Brett L CarlsonMayo Clinic, Rochester, Minnesota.
Daniel J MaMayo Clinic, Rochester, Minnesota.
Gobinda SarkarMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-7879-124X
Lisa EversTranslational Genomics Research Institute, Phoenix, Arizona.
Paul A DeckerMayo Clinic, Rochester, Minnesota.
Huihuang YanMayo Clinic, Rochester, Minnesota.
Harshil D DhruvTranslational Genomics Research Institute, Phoenix, Arizona.
Michael E BerensTranslational Genomics Research Institute, Phoenix, Arizona.ORCID 0000-0002-3382-6787
Qianghu WangNanjing Medical University, Nanjing, China.ORCID 0000-0002-3488-1059
Bianca M MarinMayo Clinic, Rochester, Minnesota.ORCID 0000-0001-8534-0378
Eric W KleeMayo Clinic, Rochester, Minnesota.
Andrea CalifanoColumbia University, New York, New York.ORCID 0000-0003-4742-3679
Daniel H LaChanceMayo Clinic, Rochester, Minnesota.
Jeanette E Eckel-PassowMayo Clinic, Rochester, Minnesota.
Roel G VerhaakJackson Laboratory for Genomic Medicine, Farmington, Connecticut.
Erik P SulmanNew York University Langone Health, New York, New York.ORCID 0000-0003-4933-9120
Terry C BurnsMayo Clinic, Rochester, Minnesota.
Fredrick B MeyerMayo Clinic, Rochester, Minnesota.
Brian P O'NeillMayo Clinic, Rochester, Minnesota.
Nhan L TranMayo Clinic Arizona, Scottsdale, Arizona.
Caterina GianniniMayo Clinic, Rochester, Minnesota.
Robert B JenkinsMayo Clinic, Rochester, Minnesota.
Ian F ParneyMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-9702-8047
Jann N SarkariaMayo Clinic, Rochester, Minnesota. sarkaria.jann@mayo.edu.
Mayo Clinic · USTranslational Genomics Research Institute · USColumbia University · USEast Carolina University · USMayo Clinic in Arizona · USNYU Langone Health · USUConn Health · USXijing University · CN

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Targeted MV-CEA as a Potent Antitumor Agent against GBMP50CA108961 · NCI · MAYO CLINIC ROCHESTER · PI O'NEILL, BRIAN PATRICK · 2004 to 2015
$22.5M
Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
Systematic Identification and Pharmacological Targeting of Tumor Dependencies for Precision Cancer MedicineU01CA217858 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2017 to 2021
$6.1M
UNDERSTANDING THE INTERACTIONS BETWEEN GERMLINE AND SOMATIC ALTERATIONS in the PATHOGENESIS OF GLIOMASR01CA230712 · NCI · MAYO CLINIC ROCHESTER · PI JENKINS, ROBERT B. · 2018 to 2022
$3.3M
Pre-Clinical Novel Radiosensitizer Evaluation Program for Brain TumorsU01CA227954 · NCI · MAYO CLINIC ROCHESTER · PI SARKARIA, JANN N. · 2018 to 2022
$3.0M
(PQD3) Mechanisms of prolonged initial disease-free survival in glioblastomaR01CA184320 · NCI · MAYO CLINIC ROCHESTER · PI SARKARIA, JANN N. · 2014 to 2017
$2.9M
Institutional Short-Term Research Training for Students of DiversityR25HL092621 · NHLBI · MAYO CLINIC ROCHESTER · PI HORAZDOVSKY, BRUCE F · 2008 to 2023
$2.0M
The Mayo GBM Xenograft National ResourceR24NS092940 · NINDS · MAYO CLINIC ROCHESTER · PI SARKARIA, JANN N. · 2016 to 2019
$1.1M
NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA108961NCI NIH HHS R01 CA184320NCI NIH HHS R01 CA230712NCI NIH HHS R35 CA197745NCI NIH HHS U01 CA217858NCI NIH HHS U01 CA227954NHLBI NIH HHS R25 HL092621NINDS NIH HHS R24 NS092940
6 · The paper itself

Abstract

purposeGlioblastoma is the most frequent and lethal primary brain tumor. Development of novel therapies relies on the availability of relevant preclinical models. We have established a panel of 96 glioblastoma patient-derived xenografts (PDX) and undertaken its genomic and phenotypic characterization. EXPERIMENTAL

designPDXs were established from glioblastoma, IDH-wildtype (

resultsPDXs recapitulate many key phenotypic and molecular features of patient tumors. Orthotopic PDXs show characteristic tumor morphology and invasion patterns, but largely lack microvascular proliferation and necrosis. PDXs capture common and rare molecular drivers, including alterations of

conclusionsOur PDX panel captures the molecular heterogeneity of glioblastoma and recapitulates many salient genetic and phenotypic features. All models and genomic data are openly available to investigators.

Indexed as

GenotypeMutationPhenotypeAdultAgedAged, 80 and overAnimalsAntineoplastic Agents, AlkylatingBiomarkers, TumorBrain NeoplasmsDNA MethylationDNA Modification MethylasesDNA Repair EnzymesErbB ReceptorsExome SequencingFemaleAntineoplastic Agents, AlkylatingBiomarkers, TumorDNA Modification MethylasesDNA Repair EnzymesEGFR protein, humanErbB ReceptorsIsocitrate DehydrogenaseMGMT protein, humanTemozolomideTumor Suppressor Proteins

Identifiers

PMID31852831
PMCPMC7056576
OpenAlexW2995968707

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.