Evidence map›Paper›PMID 31851782›Full record

ArticleMolecular genetics & genomic medicine2020

Testing single/combined clinical categories on 5110 Italian patients with developmental phenotypes to improve array-based detection rate.

Ilaria Catusi, Maria Paola Recalcati, Ilaria Bestetti, Maria Garzo, Chiara Valtorta, Melissa Alfonsi, Alberta Alghisi, Stefania Cappellani, Rosario Casalone, Rossella Caselli and 30 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. CNV profiles of Chinese pediatric patients with developmental disorders.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 20 institutions in 1 country.

Ilaria CatusiLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.ORCID 0000-0002-8108-1521
Maria Paola RecalcatiLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
Ilaria BestettiLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
Maria GarzoLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
Chiara ValtortaLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
Melissa AlfonsiU.O.C. di Genetica medica, Ospedale SS Annunziata, Chieti, Italy.
Alberta AlghisiU.O.S. Genetica e Biologia Molecolare, Azienda ULSS 6, Vicenza, Italy.
Stefania CappellaniS.C. Genetica Medica, IRCCS Burlo Garofolo, Trieste, Italy.
Rosario CasaloneSMeL specializzato Citogenetica e Genetica Medica, ASST Sette Laghi, Osp. di Circolo e Fond. Macchi, Varese, Italy.
Rossella CaselliU.O.C. Genetica Medica, Azienda Ospedaliera Universitaria Senese, Siena, Italy.
Caterina CeccariniLab. di Citogenetica, A.O.U. Ospedali Riuniti, Foggia, Italy.
Carlo CegliaUOSD Genetica Medica, AORN "SG Moscati", Avellino, Italy.
Anna Maria CiaschiniA.O.U. Ospedali Riuniti Umberto I - G.M.Lancisi - G.Salesi, Lab. Genetica Medica SOS Malattie Rare, Ancona, Italy.
Domenico CovielloLab. di Genetica Umana, IRCCS Istituto Giannina Gaslini, Genova, Italy.
Francesca CrostiU.S. Genetica Medica, Ospedale San Gerardo ASST Monza, Monza, Italy.
Annamaria D'AprileLab. di Citogenetica, A.O.U. Ospedali Riuniti, Foggia, Italy.
Antonella FabrettoS.C. Genetica Medica, IRCCS Burlo Garofolo, Trieste, Italy.
Rita GenesioU.O.C. di Citogenetica, A.O.U. Federico II, Napoli, Italy.
Marzia GiagnacovoLab. di Genetica, ASST Lariana Ospedale Sant' Anna, Como, Italy.
Paola GranataSMeL specializzato Citogenetica e Genetica Medica, ASST Sette Laghi, Osp. di Circolo e Fond. Macchi, Varese, Italy.
Ilaria LongoU.O.C. Genetica Medica, Azienda Ospedaliera Universitaria Senese, Siena, Italy.
Michela MalacarneLab. di Genetica Umana, IRCCS Istituto Giannina Gaslini, Genova, Italy.
Giuseppina MarsegliaS.O.D. Diagnostica Genetica, A.O.U. Careggi, Firenze, Italy.
Annamaria MontaldiU.O.S. Genetica e Biologia Molecolare, Azienda ULSS 6, Vicenza, Italy.
Anna Maria NardoneU.O.C. Lab. di Genetica Medica, Policlinico Tor Vergata, Roma, Italy.
Chiara PalkaDipartimento di Pediatria, Università G. D'Annunzio, Chieti-Pescara, Italy.
Vanna PecileS.C. Genetica Medica, IRCCS Burlo Garofolo, Trieste, Italy.
Chiara PessinaSMeL specializzato Citogenetica e Genetica Medica, ASST Sette Laghi, Osp. di Circolo e Fond. Macchi, Varese, Italy.
Diana PostorivoU.O.C. Lab. di Genetica Medica, Policlinico Tor Vergata, Roma, Italy.
Serena RedaelliDipartimento di Medicina e Chirurgia, Università di Milano-Bicocca, Monza, Italy.
Alessandra RenieriU.O.C. Genetica Medica, Azienda Ospedaliera Universitaria Senese, Siena, Italy.
Chiara RigonU.O.C. Genetica e Epidemiologia Clinica, A.O.U. di Padova, Padova, Italy.
Fabiola TiberiA.O.U. Ospedali Riuniti Umberto I - G.M.Lancisi - G.Salesi, Lab. Genetica Medica SOS Malattie Rare, Ancona, Italy.
Mariella TonelliLCGM Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Brescia, Italy.
Nicoletta VillaU.S. Genetica Medica, Ospedale San Gerardo ASST Monza, Monza, Italy.
Anna ZilioU.O.S. Genetica e Biologia Molecolare, Azienda ULSS 6, Vicenza, Italy.
Daniela ZuccarelloU.O.C. Genetica e Epidemiologia Clinica, A.O.U. di Padova, Padova, Italy.
Antonio NovelliU.O.C. Laboratorio di Genetica Medica, Ospedale Pediatrico del Bambino Gesù, Roma, Italy.
Lidia LarizzaLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
Daniela GiardinoLab. di Citogenetica Medica, Istituto Auxologico Italiano, IRCCS, Milano, Italy.
IRCCS Istituto Auxologico Italiano · ITAzienda Ospedaliera Universitaria Senese · ITIRCCS Materno Infantile Burlo Garofolo · ITIstituto di Genetica Molecolare · ITOspedale di Circolo e Fondazione Macchi · ITAzienda Ospedaliera San Gerardo · ITIstituto Giannina Gaslini · ITOspedali Riuniti di Foggia · ITOspedali Riuniti Umberto I · ITPoliclinico Tor Vergata · ITUniversity of Padua · ITAzienda Ospedaliera S.Giuseppe Moscati · ITAzienda Ospedaliero-Universitaria Careggi · ITAzienda Socio Sanitaria Territoriale Lariana · ITBambino Gesù Children's Hospital · ITFederico II University Hospital · ITOspedale SS. Annunziata · ITUniversity of Brescia · ITUniversity of Chieti-Pescara · ITUniversity of Milano-Bicocca · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChromosomal microarray analysis (CMA) is nowadays widely used in the diagnostic path of patients with clinical phenotypes. However, there is no ascertained evidence to date on how to assemble single/combined clinical categories of developmental phenotypic findings to improve the array-based detection rate.

methodsThe Italian Society of Human Genetics coordinated a retrospective study which included CMA results of 5,110 Italian patients referred to 17 genetics laboratories for variable combined clinical phenotypes.

resultsNon-polymorphic copy number variants (CNVs) were identified in 1512 patients (30%) and 615 (32%) present in 552 patients (11%) were classified as pathogenic. CNVs were analysed according to type, size, inheritance pattern, distribution among chromosomes, and association to known syndromes. In addition, the evaluation of the detection rate of clinical subgroups of patients allowed to associate dysmorphisms and/or congenital malformations combined with any other single clinical sign to an increased detection rate, whereas non-syndromic neurodevelopmental signs and non-syndromic congenital malformations to a decreased detection rate.

conclusionsOur retrospective study resulted in confirming the high detection rate of CMA and indicated new clinical markers useful to optimize their inclusion in the diagnostic and rehabilitative path of patients with developmental phenotypes.

Indexed as

Chromosome AberrationsPractice Guidelines as TopicDevelopmental DisabilitiesDNA Copy Number VariationsGenetics, MedicalGenetic TestingHumansItalyOligonucleotide Array Sequence AnalysisPhenotypeSensitivity and SpecificitySocieties, MedicalChromosomal microarray analysis (CMA)clinical marker identificationdetection ratepathogenic CNV

Identifiers

PMID31851782
PMCPMC6978242
OpenAlexW2994678601

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.