Evidence map›Paper›PMID 31850641›Full record

ReviewPeriodontology 20002020

Host-microbe interactions: Profiles in the transcriptome, the proteome, and the metabolome.

Trang Nguyen, Lea Sedghi, Sean Ganther, Erin Malone, Pachiyappan Kamarajan, Yvonne L Kapila

Open access · greenAbstract readReview
In one paragraph

Review in Periodontology 2000, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Periodontal disease metabolomics signatures from different biofluids: a systematic review.Metabolomics : Official journal of the Metabolomic Society · 2022
    Pooled it
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Cystatin SN (CST1) as a Novel Salivary Biomarker of Periodontitis.International journal of molecular sciences · 2023
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. The Role ofFrontiers in cellular and infection microbiology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Trang NguyenSchool of Dentistry, University of California San Francisco, San Francisco, California, USA.
Lea SedghiDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, California, USA.
Sean GantherDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, California, USA.
Erin MaloneDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, California, USA.
Pachiyappan KamarajanDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, California, USA.
Yvonne L KapilaDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, California, USA.
University of California, San Francisco · US

Funding

UCSF INTEGRATED DDS-PHD TRAINING PROGRAMT32DE007306 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Yukiko Nakano · 1996 to 2026
$15.4M
Treponema - Host Cell and Tissue InteractionsR01DE025225 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI J CHRISTOPHER FENNO, Yvonne L Kapila · 2015 to 2026
$6.3M
Characterization of Treponema Denticola-Mediated Interactions With Periodontal Ligament Cells Leading to Persistent Host Cell/Tissue DestructionF30DE027598 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALONE, ERIN TRENT · 2017 to 2022
$280k
NIDCR NIH HHS F30 DE027598NIDCR NIH HHS R01 DE025225NIDCR NIH HHS T32 DE007306NIH HHS F30DE027598NIH HHS R01 DE025225NIH HHS T32DE007306
6 · The paper itself

Abstract

Periodontal studies using transcriptomics, proteomics, and metabolomics encompass the collection of mRNA transcripts, proteins, and small-molecule chemicals in the context of periodontal health and disease. The number of studies using these approaches has significantly increased in the last decade and they have provided new insight into the pathogenesis and host-microbe interactions that define periodontal diseases. This review provides an overview of current molecular findings using -omic approaches that underlie periodontal disease, including modulation of the host immune response, tissue homeostasis, and complex metabolic processes of the host and the oral microbiome. Integration of these -omic approaches will broaden our perspective of the molecular mechanisms involved in periodontal disease, advancing and improving the diagnosis and treatment of various stages and forms of periodontal disease.

Indexed as

MetabolomeTranscriptomeHumansMetabolomicsProteomeProteomicsProteome

Identifiers

PMID31850641
PMCPMC7968888
OpenAlexW2996023322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.