Evidence map›Paper›PMID 31850080›Full record

ReviewFrontiers in genetics2019

Circadian Regulation of the Plant Transcriptome Under Natural Conditions.

Paige E Panter, Tomoaki Muranaka, David Cuitun-Coronado, Calum A Graham, Aline Yochikawa, Hiroshi Kudoh, Antony N Dodd

Abstract readReview
In one paragraph

Review in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Circadian and environmental signal integration in a natural population ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Embracing complexity in plant-microbiome systems.Environmental microbiology reports · 2024
    Review
  9. Article
  10. Article
  11. Focus on circadian rhythms.Plant physiology · 2022
    Article
  12. Article
  13. Article
  14. Identification and Characterization ofInternational journal of molecular sciences · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Paige E PanterDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.
Tomoaki MuranakaCenter for Ecological Research, Kyoto University, Otsu, Japan.
David Cuitun-CoronadoDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.
Calum A GrahamDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.
Aline YochikawaSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.
Hiroshi KudohCenter for Ecological Research, Kyoto University, Otsu, Japan.
Antony N DoddDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9788
6 · The paper itself

Abstract

Circadian rhythms produce a biological measure of the time of day. In plants, circadian regulation forms an essential adaptation to the fluctuating environment. Most of our knowledge of the molecular aspects of circadian regulation in plants is derived from laboratory experiments that are performed under controlled conditions. However, it is emerging that the circadian clock has complex roles in the coordination of the transcriptome under natural conditions, in both naturally occurring populations of plants and in crop species. In this review, we consider recent insights into circadian regulation under natural conditions. We examine how circadian regulation is integrated with the acute responses of plants to the daily and seasonally fluctuating environment that also presents environmental stresses, in order to coordinate the transcriptome and dynamically adapt plants to their continuously changing environment.

Indexed as

Arabidopsiscircadian rhythmsenvironmental signalingphenologyplant sciencessignal integrationtranscriptomics

Identifiers

PMID31850080
PMCPMC6895068

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.