Evidence map›Paper›PMID 31850009›Full record

ArticleFrontiers in plant science2019

Understanding the Genetic Basis of Spike Fertility to Improve Grain Number, Harvest Index, and Grain Yield in Wheat Under High Temperature Stress Environments.

Sumit Pradhan, Md Ali Babar, Kelly Robbins, Guihua Bai, Richard Esten Mason, Jahangir Khan, Dipendra Shahi, Muhsin Avci, Jia Guo, Mohammad Maksud Hossain and 8 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 87 citations in OpenAlex.

  1. Review
  2. Identification of a stable genetic locus and candidate genes for Fusarium head blight resistance on wheat chromosome 3BL.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 1 country.

Sumit PradhanDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Md Ali BabarDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Kelly RobbinsSchool of Integrative Plant Science, Section of Plant Breeding and Genetics, Cornell University, Ithaca, NY, United States.
Guihua BaiUSDA-ARS, Manhattan, KS, United States.
Richard Esten MasonCrop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States.
Jahangir KhanDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Dipendra ShahiDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Muhsin AvciDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Jia GuoDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Mohammad Maksud HossainDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Madhav BhattaDepartment of Agronomy, University of Wisconsin, Madison, WI, United States.
Mohamed MergoumDepartment of Crop and Soil Sciences, University of Georgia, Griffin, GA, United States.
Senthold AssengAgricultural and Biological Engineering, University of Florida, Gainesville, FL, United States.
Paul St AmandUSDA-ARS, Manhattan, KS, United States.
Salvador GezanSchool of Forest Resources and Conservation, University of Florida, Gainesville, FL, United States.
Byung-Kee BaikUSDA-ARS, Wooster, OH, United States.
Ann BlountDepartment of Agronomy, University of Florida, Gainesville, FL, United States.
Amy BernardoDepartment of Plant Pathology, Kansas State University, Manhattan, KS, United States.
University of Florida · USCenter for Grain and Animal Health Research · USCornell University · USKansas State University · USUniversity of Arkansas at Fayetteville · USUniversity of Georgia · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Moderate heat stress accompanied by short episodes of extreme heat during the post-anthesis stage is common in most US wheat growing areas and causes substantial yield losses. Sink strength (grain number) is a key yield limiting factor in modern wheat varieties. Increasing spike fertility (SF) and improving the partitioning of assimilates can optimize sink strength which is essential to improve wheat yield potential under a hot and humid environment. A genome-wide association study (GWAS) allows identification of novel quantitative trait loci (QTLs) associated with SF and other partitioning traits that can assist in marker assisted breeding. In this study, GWAS was performed on a soft wheat association mapping panel (SWAMP) comprised of 236 elite lines using 27,466 single nucleotide polymorphisms (SNPs). The panel was phenotyped in two heat stress locations over 3 years. GWAS identified 109 significant marker-trait associations (MTAs) (p ≤ 9.99 x 10-5) related to eight phenotypic traits including SF (a major component of grain number) and spike harvest index (SHI, a major component of grain weight). MTAs detected on chromosomes 1B, 3A, 3B, and 5A were associated with multiple traits and are potentially important targets for selection. More than half of the significant MTAs (60 out of 109) were found in genes encoding different types of proteins related to metabolism, disease, and abiotic stress including heat stress. These MTAs could be potential targets for further validation study and may be used in marker-assisted breeding for improving wheat grain yield under post-anthesis heat stress conditions. This is the first study to identify novel QTLs associated with SF and SHI which represent the major components of grain number and grain weight, respectively, in wheat.

Indexed as

genome-wide association studygenotyping-by-sequencingmarker-assisted breedingmarker-trait associationsquantitative trait locisingle nucleotide polymorphismsspike fertilityspike harvest index

Identifiers

PMID31850009
PMCPMC6895025
OpenAlexW2991364665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.