Evidence map›Paper›PMID 31849921›Full record

ArticleFrontiers in microbiology2019

Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of

Xiong Zhang, Bo Liu, Fen Zou, Danyu Shen, Zhiyuan Yin, Rongbo Wang, Feng He, Yuanchao Wang, Brett M Tyler, Wei Fan and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  5. Article
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  7. Article
  8. Article
  9. Article
  10. Genomic and transcriptomic analyses ofFrontiers in microbiology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Genome analysis ofFrontiers in microbiology · 2023
    Article
  16. Article
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  18. Article
  19. Molecular mechanisms ofFrontiers in microbiology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Xiong ZhangDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Bo LiuAgricultural Genomic Institute, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Fen ZouDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Danyu ShenDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Zhiyuan YinDepartment of Plant Pathology, China Agricultural University, Beijing, China.
Rongbo WangDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Feng HeDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Yuanchao WangDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Brett M TylerCenter for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, United States.
Wei FanAgricultural Genomic Institute, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Wanqiang QianAgricultural Genomic Institute, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Daolong DouDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Nanjing Agricultural University · CNAgricultural Genomics Institute at Shenzhen · CNChina Agricultural University · CNBiocom · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Due to the monocultural basis of agricultural crops, mutated plant microbes with increased pathogenicity can easily spread in the field and lead to serious yield losses. As a major threat to a wide range of crop plants, oomycete pathogens continuously undergo adaptive evolution to overcome plant defense barriers. However, the genetic basis of their evolution at the molecular level remains largely unknown. Here, we investigated the nature variation and the population genomics of the soybean pathogen

Indexed as

adaptive evolutionavirulent genesgenome re-sequencingnatural variationPhytophthora sojaeRxLR effectors

Identifiers

PMID31849921
PMCPMC6895562
OpenAlexW2990070537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.