Evidence map›Paper›PMID 31849324›Full record

ArticleBMC cancer2019

Evaluation of gene-environment interactions for colorectal cancer susceptibility loci using case-only and case-control designs.

Nan Song, Jeeyoo Lee, Sooyoung Cho, Jeongseon Kim, Jae Hwan Oh, Aesun Shin

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Article
  7. Article
  8. Review
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  10. Review
  11. Implication of gut microbes and its metabolites in colorectal cancer.Journal of cancer research and clinical oncology · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Impact of Gene-Environment Interactions on Cancer Development.International journal of environmental research and public health · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Nan SongCancer Research Institute, Seoul National University, Seoul, South Korea.
Jeeyoo LeeDepartment of Preventive Medicine, College of Medicine, Seoul National University, Seoul, South Korea.
Sooyoung ChoDepartment of Preventive Medicine, College of Medicine, Seoul National University, Seoul, South Korea.
Jeongseon KimMolecular Epidemiology Branch, National Cancer Center, Goyang, South Korea.
Jae Hwan OhCenter for Colorectal Cancer, National Cancer Center, Goyang, South Korea.
Aesun ShinCancer Research Institute, Seoul National University, Seoul, South Korea. shinaesun@snu.ac.kr.ORCID http://orcid.org/0000-0002-9182-1060
Seoul National University · KRNational Cancer Center · KRSt. Jude Children's Research Hospital · US

Funding

National Cancer Center 0910220National Cancer Center 1210141National Research Foundation of Korea 2009-0093820National Research Foundation of Korea 2010-0010276National Research Foundation of Korea 2016R1D1A1B04935872National Research Foundation of Korea 2017R1A2B4009233
6 · The paper itself

Abstract

backgroundGenome-wide association studies (GWAS) have identified more than 40 colorectal cancer susceptibility loci, but only a small fraction of heritability was explained. To account for missing heritability, we investigated gene-environment interactions (G × Es) between GWAS-identified single-nucleotide polymorphisms (SNPs) and established risk or protective factors for colorectal cancer using both case-only and case-control study designs.

methodsData on 703 colorectal cancer cases and 1406 healthy controls from the National Cancer Center in Korea were used. We tested interactions between 31 GWAS-identified SNPs and 13 established risk or protective factors for colorectal cancer (family history, body mass index, history of colorectal polyps, inflammatory bowel disease, and diabetes mellitus, alcohol drinking, smoking, regular exercise, regular aspirin use, postmenopausal hormone replace therapy, red meat and processed meat intake, and dairy consumption). Logistic regression models were used to assess G × Es for colorectal cancer risk.

resultsThe SNP rs4444235 at 14q22.2 interacted with regular exercise in colorectal cancer (p

conclusionOur results suggest that SNP rs4444235 at 14q22.2 and SNP rs2423279 at 20p12.3 may interact with regular exercise and aspirin use in colorectal carcinogenesis.

Indexed as

Gene-Environment InteractionCase-Control StudiesColorectal NeoplasmsFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedPolymorphism, Single NucleotideRepublic of KoreaCase-control designCase-only designColorectal cancerGene-environment interactionSingle-nucleotide polymorphism

Identifiers

PMID31849324
PMCPMC6918639
OpenAlexW2995421410

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.