Evidence map›Paper›PMID 31848477›Full record

ReviewNature reviews. Genetics2020

Overcoming challenges and dogmas to understand the functions of pseudogenes.

Seth W Cheetham, Geoffrey J Faulkner, Marcel E Dinger

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed.

  1. Review
  2. The dark genome in cardiovascular medicine.European heart journal · 2026
    Review
  3. Review
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  5. Review
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  8. Regulation of antiviral and antitumor immunity by theProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  11. Multifaceted role ofiScience · 2026
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  15. Article
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  20. Article

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Seth W CheethamMater Research Institute, University of Queensland, TRI Building, Woolloongabba, QLD, Australia. seth.cheetham@mater.uq.edu.au.ORCID http://orcid.org/0000-0001-6428-3175
Geoffrey J FaulknerMater Research Institute, University of Queensland, TRI Building, Woolloongabba, QLD, Australia.ORCID http://orcid.org/0000-0001-5769-4494
Marcel E DingerSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia. m.dinger@unsw.edu.au.ORCID http://orcid.org/0000-0003-4423-934X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudogenes are defined as regions of the genome that contain defective copies of genes. They exist across almost all forms of life, and in mammalian genomes are annotated in similar numbers to recognized protein-coding genes. Although often presumed to lack function, growing numbers of pseudogenes are being found to play important biological roles. In consideration of their evolutionary origins and inherent limitations in genome annotation practices, we posit that pseudogenes have been classified on a scientifically unsubstantiated basis. We reflect that a broad misunderstanding of pseudogenes, perpetuated in part by the pejorative inference of the 'pseudogene' label, has led to their frequent dismissal from functional assessment and exclusion from genomic analyses. With the advent of technologies that simplify the study of pseudogenes, we propose that an objective reassessment of these genomic elements will reveal valuable insights into genome function and evolution.

Indexed as

PseudogenesAnimalsEvolution, MolecularGenomicsHumans

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.