Evidence map›Paper›PMID 31848285›Full record

ArticlemBio2019

Diversity in Natural Transformation Frequencies and Regulation across

Chelsea A Simpson, Ram Podicheti, Douglas B Rusch, Ankur B Dalia, Julia C van Kessel

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Quorum sensing regulates virulence factors in the coral pathogenApplied and environmental microbiology · 2025
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  5. Vibrio natriegens: Application of a Fast-Growing Halophilic Bacterium.Advances in biochemical engineering/biotechnology · 2025
    Review
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  7. Mobile-CRISPRi protocol optimization forMicrobiology resource announcements · 2024
    Article
  8. Mobile-CRISPRi as a powerful tool for modulatingApplied and environmental microbiology · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Bacterial DNA involvement in carcinogenesis.Frontiers in cellular and infection microbiology · 2022
    Review
  15. Review
  16. A Strategy for the Rapid Development of a SafeInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Chelsea A SimpsonDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Ram PodichetiCenter for Genomics and Bioinformatics, Indiana University, Bloomington, Indiana, USA.
Douglas B RuschCenter for Genomics and Bioinformatics, Indiana University, Bloomington, Indiana, USA.
Ankur B DaliaDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Julia C van KesselDepartment of Biology, Indiana University, Bloomington, Indiana, USA jcvk@indiana.edu.
Indiana University Bloomington · US

Funding

Quorum sensing regulation of bacterial developmentR35GM124698 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Julia C. van Kessel · 2017 to 2026
$4.1M
Mechanisms and regulation of horizontal gene transfer by natural transformation in Vibrio choleraeR35GM128674 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Ankur Dalia · 2018 to 2026
$3.8M
NIGMS NIH HHS R35 GM124698NIGMS NIH HHS R35 GM128674
6 · The paper itself

Abstract

In

Indexed as

Gene Expression Regulation, BacterialTransformation, BacterialBacterial ProteinsDNA, BacterialDNA Transformation CompetenceGene ExpressionHumansModels, BiologicalPhenotypePhylogenyQuorum SensingTrans-ActivatorsVibrioBacterial ProteinsDNA, BacterialTrans-Activatorscompetencenatural transformationquorum sensingvibrio

Identifiers

PMID31848285
PMCPMC6918086
OpenAlexW2996644443

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.