Evidence map›Paper›PMID 31848226›Full record

ArticleThe Journal of biological chemistry2020

Substrate binding in the processive cellulase Cel7A: Transition state of complexation and roles of conserved tryptophan residues.

Nanna Røjel, Jeppe Kari, Trine Holst Sørensen, Silke F Badino, J Preben Morth, Kay Schaller, Ana Mafalda Cavaleiro, Kim Borch, Peter Westh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Single-molecule tracking reveals dual front door/back door inhibition of Cel7A cellulase by its product cellobiose.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Nanna RøjelInstitut for Naturvidenskab og Miljo, Roskilde University, DK-4000 Roskilde, Denmark.
Jeppe KariDepartment of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.
Trine Holst SørensenNovozymes A/S, DK-2800 Kgs. Lyngby Denmark.
Silke F BadinoInstitut for Naturvidenskab og Miljo, Roskilde University, DK-4000 Roskilde, Denmark.
J Preben MorthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.
Kay SchallerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.
Ana Mafalda CavaleiroNovozymes A/S, DK-2800 Kgs. Lyngby Denmark.
Kim BorchNovozymes A/S, DK-2800 Kgs. Lyngby Denmark.
Peter WesthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark. Electronic address: petwe@dtu.dk.
Technical University of Denmark · DKNovozymes (Denmark) · DKRoskilde University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellobiohydrolases effectively degrade cellulose and are of biotechnological interest because they can convert lignocellulosic biomass to fermentable sugars. Here, we implemented a fluorescence-based method for real-time measurements of complexation and decomplexation of the processive cellulase Cel7A and its insoluble substrate, cellulose. The method enabled detailed kinetic and thermodynamic analyses of ligand binding in a heterogeneous system. We studied WT Cel7A and several variants in which one or two of four highly conserved Trp residues in the binding tunnel had been replaced with Ala. WT Cel7A had on/off-rate constants of 1 × 10

Indexed as

Catalytic DomainCellulaseCelluloseEnzyme ActivationFungal ProteinsKineticsModels, MolecularProtein BindingSubstrate SpecificityThermodynamicsTrichodermaTryptophanCellulaseCelluloseFungal ProteinsTryptophancellobiohydrolasecellulasecomplexenzyme kineticsfluorescencepre-steady-state kineticsprotein engineeringthermodynamicsTransition statetryptophan

Identifiers

PMID31848226
PMCPMC7008363
OpenAlexW2995812256

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.