Evidence map›Paper›PMID 31847873›Full record

ArticleGenome medicine2019

A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation.

Hannah Demond, Zahra Anvar, Bahia Namavar Jahromi, Angela Sparago, Ankit Verma, Maryam Davari, Luciano Calzari, Silvia Russo, Mojgan Akbarzadeh Jahromi, David Monk and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Probing Proteoform Heterogeneity From Single Human Oocytes.Molecular & cellular proteomics : MCP · 2026
    Article
  3. Article
  4. Article
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  17. A maternal-effectGenes & development · 2024
    Article
  18. PABPN1L is required for maternal mRNA degradation after meiosis resumption.The Journal of reproduction and development · 2024
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Hannah DemondEpigenetics Programme, Babraham Institute, Cambridge, UK.
Zahra AnvarInfertility Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. zahraanvar2000@yahoo.com.
Bahia Namavar JahromiInfertility Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Angela SparagoDipartimento di Scienze e Tecnologie Ambientali Biologiche e Farmaceutiche, Università degli Studi della Campania 'Luigi Vanvitelli', Caserta, Italy.
Ankit VermaInstitute of Genetics and Biophysics 'Adriano Buzzati-Traverso', Consiglio Nazionale delle Ricerche (CNR), Naples, Italy.
Maryam DavariDepartment of Obstetrics and Gynecology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Luciano CalzariMedical Cytogenetics and Molecular Genetics Laboratory, Centro di Ricerche e Tecnologie Biomediche IRCCS, Istituto Auxologico Italiano, Milan, Italy.
Silvia RussoMedical Cytogenetics and Molecular Genetics Laboratory, Centro di Ricerche e Tecnologie Biomediche IRCCS, Istituto Auxologico Italiano, Milan, Italy.
Mojgan Akbarzadeh JahromiDepartment of Pathology, Shiraz University of Medical Sciences, Shiraz, Iran.
David MonkImprinting and Cancer Group, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.
Simon AndrewsBioinformatics Group, Babraham Institute, Cambridge, UK.
Andrea RiccioInstitute of Genetics and Biophysics 'Adriano Buzzati-Traverso', Consiglio Nazionale delle Ricerche (CNR), Naples, Italy. andrea.riccio@unicampania.it.
Gavin KelseyEpigenetics Programme, Babraham Institute, Cambridge, UK. gavin.kelsey@babraham.ac.uk.ORCID 0000-0002-9762-5634
Shiraz University of Medical Sciences · IRBabraham Institute · GBUniversity of Campania "Luigi Vanvitelli" · ITIRCCS Istituto Auxologico Italiano · ITInstitut d'Investigació Biomédica de Bellvitge · ES

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/000C0423Medical Research Council MR/K011332/1Medical Research Council MR/S000437/1
6 · The paper itself

Abstract

backgroundMaternal effect mutations in the components of the subcortical maternal complex (SCMC) of the human oocyte can cause early embryonic failure, gestational abnormalities and recurrent pregnancy loss. Enigmatically, they are also associated with DNA methylation abnormalities at imprinted genes in conceptuses: in the devastating gestational abnormality biparental complete hydatidiform mole (BiCHM) or in multi-locus imprinting disease (MLID). However, the developmental timing, genomic extent and mechanistic basis of these imprinting defects are unknown. The rarity of these disorders and the possibility that methylation defects originate in oocytes have made these questions very challenging to address.

methodsSingle-cell bisulphite sequencing (scBS-seq) was used to assess methylation in oocytes from a patient with BiCHM identified to be homozygous for an inactivating mutation in the human SCMC component KHDC3L. Genome-wide methylation analysis of a preimplantation embryo and molar tissue from the same patient was also performed.

resultsHigh-coverage scBS-seq libraries were obtained from five KHDC3L

conclusionsWe show for the first time that the integrity of the SCMC is essential for de novo methylation in the female germline. These findings have important implications for understanding the role of the SCMC in DNA methylation and for the origin of imprinting defects, for counselling affected families, and will help inform future therapeutic approaches.

Indexed as

DNA MethylationAdultBlastocystFemaleHumansHydatidiform MoleNeoplasm Recurrence, LocalOocytesPlacentaPolymorphism, Single NucleotidePregnancyProteinsSequence Analysis, DNASingle-Cell AnalysisUterine NeoplasmsKHDC3L protein, humanProteinsDNA methylationEmbryosEpigeneticsGenomic imprintingOocytesSingle-cell analysis

Identifiers

PMID31847873
PMCPMC6918611
OpenAlexW2996471133

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.