Evidence map›Paper›PMID 31846000›Full record

ArticleJournal of experimental botany2020

Association mapping and genetic dissection of drought-induced canopy temperature differences in rice.

Giovanni Melandri, Ankush Prashar, Susan R McCouch, Gerard van der Linden, Hamlyn G Jones, Niteen Kadam, Krishna Jagadish, Harro Bouwmeester, Carolien Ruyter-Spira

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 53 citations in OpenAlex.

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  14. Breeding rice for a changing climate by improving adaptations to water saving technologies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  15. Article
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  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 5 countries.

Giovanni MelandriLaboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands.
Ankush PrasharSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK.
Susan R McCouchPlant Breeding and Genetics, Cornell University, Ithaca, NY, USA.
Gerard van der LindenWageningen UR Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Hamlyn G JonesPlant Science Division, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, UK.
Niteen KadamCentre for Crop Systems Analysis, Wageningen University and Research, Wageningen, The Netherlands.
Krishna JagadishInternational Rice Research Institute, Los Baños, Philippines.
Harro BouwmeesterLaboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands.
Carolien Ruyter-SpiraLaboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands.
Cornell University · USWageningen University & Research · NLInternational Rice Research Institute · PHJames Hutton Institute · GBNewcastle University · GBUniversity of Amsterdam · NLUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought-stressed plants display reduced stomatal conductance, which results in increased leaf temperature by limiting transpiration. In this study, thermal imaging was used to quantify the differences in canopy temperature under drought in a rice diversity panel consisting of 293 indica accessions. The population was grown under paddy field conditions and drought stress was imposed for 2 weeks at flowering. The canopy temperature of the accessions during stress negatively correlated with grain yield (r= -0.48) and positively with plant height (r=0.56). Temperature values were used to perform a genome-wide association (GWA) analysis using a 45K single nucleotide polynmorphism (SNP) map. A quantitative trait locus (QTL) for canopy temperature under drought was detected on chromosome 3 and fine-mapped using a high-density imputed SNP map. The candidate genes underlying the QTL point towards differences in the regulation of guard cell solute intake for stomatal opening as the possible source of temperature variation. Genetic variation for the significant markers of the QTL was present only within the tall, low-yielding landraces adapted to drought-prone environments. The absence of variation in the shorter genotypes, which showed lower leaf temperature and higher grain yield, suggests that breeding for high grain yield in rice under paddy conditions has reduced genetic variation for stomatal response under drought.

Indexed as

DroughtsOryzaTemperatureChromosome MappingGenome-Wide Association StudyPhenotypePlant BreedingCanopy temperaturedroughtgenome-wide association studies (GWAS)haplotype analysisOryza sativathermal imaging

Identifiers

PMID31846000
PMCPMC7031080
OpenAlexW2995340511

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.