Evidence map›Paper›PMID 31845303›Full record

ArticlePlant molecular biology2020

Transcriptome changes in reciprocal grafts involving watermelon and bottle gourd reveal molecular mechanisms involved in increase of the fruit size, rind toughness and soluble solids.

Marleny Garcia-Lozano, Sudip Kumar Dutta, Purushothaman Natarajan, Yan R Tomason, Carlos Lopez, Ramesh Katam, Amnon Levi, Padma Nimmakayala, Umesh K Reddy

Abstract read
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Article in Plant molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Grafting based DNA methylation alteration of snoRNAs in upland cotton (Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Scion-to-Rootstock Mobile Transcription FactorInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Marleny Garcia-LozanoDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA.
Sudip Kumar DuttaDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA.
Purushothaman NatarajanDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA.
Yan R TomasonDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA.
Carlos LopezDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA.
Ramesh KatamDepartment of Biological Sciences, Florida A&M University, Tallahassee, FL, 32317, USA.
Amnon LeviUSDA, ARS, U.S. Vegetable Lab, 2700 Savannah Highway, Charleston, SC, USA.
Padma NimmakayalaDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA. padma@wvstateu.edu.
Umesh K ReddyDepartment of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV, 25112-1000, USA. ureddy@wvstateu.edu.ORCID http://orcid.org/0000-0003-4611-7143
West Virginia State University · USFlorida Agricultural and Mechanical University · USU.S. Vegetable Laboratory · US

Funding

USDA-NIFA 2015-38821-24373USDA-NIFA 2015-38821-24375
6 · The paper itself

Abstract

key messageTranscriptome landscape reveals the molecular mechanisms involved in the improvement of fruit traits by the grafting of watermelon and bottle gourd. Grafting has been used as a sustainable alternative for watermelon breeding to control soil-borne pathogens and to increase tolerance to various abiotic stresses. However, some reports have shown that grafting can negatively affect the quality of fruits. Despite several field studies on the effects of grafting on fruit quality, the regulation of this process at the molecular level has not been revealed. The aim of this study was to elucidate various molecular mechanisms involved in different tissues of heterografted watermelon and bottle gourd plants. Grafting with bottle gourd rootstock increased the size and rind thickness of watermelon fruits, whereas that with watermelon rootstock produced bottle gourd fruits with higher total soluble solid content and thinner rinds. Correspondingly, genes related to ripening, softening, cell wall strengthening, stress response and disease resistance were differentially expressed in watermelon fruits. Moreover, genes associated mainly with sugar metabolism were differentially expressed in bottle gourd fruits. RNA-seq revealed more than 400 mobile transcripts across the heterografted sets. More than half of these were validated from PlaMoM, a database for plant mobile macromolecules. In addition, some of these mobile transcripts contained a transfer RNA-like structure. Other RNA motifs were also enriched in these transcripts, most with a biological role based on GO analysis. This transcriptome study provided a comprehensive understanding of various molecular mechanisms underlying grafted tissues in watermelon.

Indexed as

TranscriptomeTransplantation, HeterologousCarbohydrate MetabolismCitrullusDisease ResistanceFruitGene Expression Regulation, PlantGene OntologyPlant BreedingPlant RootsRNA, MessengerRNA, PlantSequence AnalysisStress, PhysiologicalRNA, MessengerRNA, PlantDifferential gene expressionFruit qualityGraftingmRNA exchange

Identifiers

PMID31845303
OpenAlexW2994945183

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.