Evidence map›Paper›PMID 31845080›Full record

ArticleMedical & biological engineering & computing2020

CFD simulations for paper-based DNA amplification reaction (LAMP) of Mycobacterium tuberculosis-point-of-care diagnostic perspective.

Debayan Das, P K Panigrahi

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Article in Medical & biological engineering & computing, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Debayan DasDepartment of Mechanical Engineering, Indian Institute of Technology Kanpur, Kanpur, 208016, India. debayand@iitk.ac.in.ORCID http://orcid.org/0000-0002-3862-7437
P K PanigrahiDepartment of Mechanical Engineering, Indian Institute of Technology Kanpur, Kanpur, 208016, India.

Funding

Department of Science and Technology, Ministry of Science and Technology DST/INSPIRE/04/2018/001536
6 · The paper itself

Abstract

Loop-mediated isothermal amplification or LAMP has been identified to be an efficient technology for point-of-care diagnostics. Paper-based LAMP technique has tremendous potential in replacing the existing tube-based technology as the manufacturing cost of a paper-based device is comparatively lower and easy-to-use. LAMP-based paper diagnostic device for Mycobacterium tuberculosis (MTB) detection is of extreme importance as it will help in early and rapid diagnosis of the affected patients. The fabrication of these devices requires assessment of design parameters on the extent of LAMP amplification reaction. Hence, CFD studies would be extremely beneficial from the design perspective. The current work presents an insight into the CFD simulations for LAMP amplification reaction on a porous paper membrane (nitrocellulose membrane). The convection-diffusion-reaction model is solved on a COMSOL Multiphysics 5.0 platform. Studies on effect of pore size, aspect ratio and initial DNA concentration on the extent of DNA amplification reaction have been carried out. The current paper-based technique is effective in detecting a minimum of 5 copies of DNA contrasting the previous semi-quantitative technique which demonstrated the detection of minimum 98 copies. Overall, the simulation results displayed almost 96% enhancement in the DNA amplification rate on paper membrane. Graphical abstract Graphical abstract for the computational study of DNA amplification reaction via LAMP technique on a porous paper membrane.

Indexed as

Computer SimulationDiagnostic Tests, RoutineHydrodynamicsNucleic Acid Amplification TechniquesPaperPoint-of-Care SystemsDNA, BacterialHumansMycobacterium tuberculosisNumerical Analysis, Computer-AssistedPorosityReproducibility of ResultsDNA, BacterialCFD simulationConvection–diffusion–reaction modelLAMPMycobacterium tuberculosisPoint-of-carePorous membranes

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.