Evidence map›Paper›PMID 31844966›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea.

Rachit K Saxena, Sandip Kale, Reyazul Rouf Mir, Nalini Mallikarjuna, Pooja Yadav, Roma Rani Das, Johiruddin Molla, Muniswamy Sonnappa, Anuradha Ghanta, Yamini Narasimhan and 3 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
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  7. Article
4 · The record

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5 · Who and what money

Authors and funding

13 authors.

Rachit K SaxenaInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
Sandip KaleThe Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Seeland, OT Gatersleben, Germany.
Reyazul Rouf MirSher-E-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), Wadura Campus, Sopore, Kashmir, 193201, India.
Nalini MallikarjunaInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
Pooja YadavInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
Roma Rani DasInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
Johiruddin MollaInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
Muniswamy SonnappaAgricultural Research Station (UAS-Raichur), Gulbarga, Karnataka, 585101, India.
Anuradha GhantaProfessor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad, Telangana, 500030, India.
Yamini NarasimhanProfessor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad, Telangana, 500030, India.
Abhishek RathoreInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India.
C V Sameer KumarProfessor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad, Telangana, 500030, India.
Rajeev K VarshneyInternational Crops Research Institute for the Semi-Arid Tropics (ICRSAT), Patancheru, Telangana, 502324, India. r.k.varshney@cgiar.org.ORCID http://orcid.org/0000-0002-4562-9131

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study has identified single-nucleotide polymorphism (SNP) markers associated with nine yield-related traits in pigeonpea by using two backcross populations (BP) developed through interspecific crosses and evaluating them at two locations and 3 years. In both the populations, markers have shown strong segregation distortion; therefore, a quantitative trait locus (QTL) mapping mixed model was used. A total of 86 QTLs explaining 12-21% phenotypic variation were detected in BP-1. On the other hand, 107 QTLs explaining 11-29% phenotypic variation were detected in BP-2. Although most QTLs were environment and trait specific, few stable and consistent QTLs were also detected. Interestingly, 11 QTLs in BP-2 were associated with more than one trait. Among these QTLs, eight QTLs associated with days to 50% flowering and days to 75% maturity were located on CcLG07. One SNP "S7_14185076" marker in BP-2 population has been found associated with four traits, namely days to 50% flowering, days to 75% maturity, primary branches per plant and secondary branches per plant with positive additive effect. Hence, the present study has not only identified QTLs for yield-related traits, but also discovered novel alleles from wild species, which can be used for improvement of traits through genomics-assisted breeding.

Indexed as

Quantitative Trait LociAllelesCajanusChromosome MappingChromosomes, PlantCrosses, GeneticGenetic Association StudiesGenetic LinkageGenetic MarkersGenomicsGenotypeGenotyping TechniquesPhenotypePolymorphism, Single NucleotideSequence Analysis, DNAGenetic Markers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.