Evidence map›Paper›PMID 31844782›Full record

ArticleInternational journal of neonatal screening2019

Next Generation Sequencing in Newborn Screening in the United Kingdom National Health Service.

Julia C van Campen, Elizabeth S A Sollars, Rebecca C Thomas, Clare M Bartlett, Antonio Milano, Matthew D Parker, Jennifer Dawe, Peter R Winship, Gerrard Peck, Darren Grafham and 4 more

Open access · goldAbstract read
In one paragraph

Article in International journal of neonatal screening, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

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  18. The Editor's Choice for Issue 3, Volume 7.International journal of neonatal screening · 2021
    Article
  19. Genetic screening techniques and diseases for neonatal genetic diseases.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2021
    Article
  20. Use of Molecular Genetic Analyses in Danish Routine Newborn Screening.International journal of neonatal screening · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Julia C van Campen *Sheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Elizabeth S A Sollars *Sheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Rebecca C Thomas *Sheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Clare M BartlettSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Antonio MilanoSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Matthew D ParkerSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Jennifer DaweSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Peter R WinshipSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Gerrard PeckSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Darren GrafhamSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Richard J KirkSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
James R BonhamDivision of Pharmacy, Diagnostics and Genetics, Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Anne C GoodeveSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Ann DaltonSheffield Diagnostic Genetics Service (SDGS), Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK.
Sheffield Children's NHS Foundation Trust · GB

Funding

Wellcome Trust 103900
6 · The paper itself

Abstract

Next generation DNA sequencing (NGS) has the potential to improve the diagnostic and prognostic utility of newborn screening programmes. This study assesses the feasibility of automating NGS on dried blood spot (DBS) DNA in a United Kingdom National Health Service (UK NHS) laboratory. An NGS panel targeting the entire coding sequence of five genes relevant to disorders currently screened for in newborns in the UK was validated on DBS DNA. An automated process for DNA extraction, NGS and bioinformatics analysis was developed. The process was tested on DBS to determine feasibility, turnaround time and cost. The analytical sensitivity of the assay was 100% and analytical specificity was 99.96%, with a mean 99.5% concordance of variant calls between DBS and venous blood samples in regions with ≥30× coverage (96.8% across all regions; all variant calls were single nucleotide variants (SNVs), with indel performance not assessed). The pipeline enabled processing of up to 1000 samples a week with a turnaround time of four days from receipt of sample to reporting. This study concluded that it is feasible to automate targeted NGS on routine DBS samples in a UK NHS laboratory setting, but it may not currently be cost effective as a first line test.

Indexed as

automationnewborn screeningnext generation sequencing

Identifiers

PMID31844782
PMCPMC6914376
OpenAlexW2983502402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.