Evidence map›Paper›PMID 31844663›Full record

ArticleScience advances2019

Necrotizing enterocolitis is preceded by increased gut bacterial replication,

Matthew R Olm, Nicholas Bhattacharya, Alexander Crits-Christoph, Brian A Firek, Robyn Baker, Yun S Song, Michael J Morowitz, Jillian F Banfield

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 8 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 8 syntheses or guidelines pooled it, 187 citations in OpenAlex.

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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Matthew R OlmDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-5540-350X
Nicholas BhattacharyaDepartment of Mathematics, University of California, Berkeley, CA, USA.
Alexander Crits-ChristophDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, USA.
Brian A FirekDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Robyn BakerDivision of Newborn Medicine, UPMC Magee-Womens Hospital, Pittsburgh, PA, USA.ORCID 0000-0002-6759-2456
Yun S SongDepartment of Statistics, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0002-0734-9868
Michael J MorowitzDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Jillian F BanfieldChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-8203-8771
University of California, Berkeley · USUniversity of Pittsburgh · USChan Zuckerberg Initiative (United States) · USMagee-Womens Hospital · USPlanetary Science Institute · US

Funding

Population Genomic Analysis of Gut Microbial Colonization in Premature InfantsR01AI092531 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Jillian Banfield, Michael Morowitz · 2011 to 2026
$11.3M
Methods for inference of complex demography and selection from genomic dataR01GM109454 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SONG, YUN S · 2013 to 2016
$1.2M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIAID NIH HHS R01 AI092531NIGMS NIH HHS R01 GM109454NIH HHS S10 OD018174
6 · The paper itself

Abstract

Necrotizing enterocolitis (NEC) is a devastating intestinal disease that occurs primarily in premature infants. We performed genome-resolved metagenomic analysis of 1163 fecal samples from premature infants to identify microbial features predictive of NEC. Features considered include genes, bacterial strain types, eukaryotes, bacteriophages, plasmids, and growth rates. A machine learning classifier found that samples collected before NEC diagnosis harbored significantly more

Indexed as

MetagenomicsEnterobacteriaceaeEnterocolitis, NecrotizingFecesFimbriae, BacterialGastrointestinal MicrobiomeHumansInfant, NewbornInfant, PrematureInfant, Premature, DiseasesKlebsiellaMultigene Family

Identifiers

PMID31844663
PMCPMC6905865
OpenAlexW2995792428

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.