Evidence map›Paper›PMID 31844660›Full record

ArticleScience advances2019

Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution.

Grant E Duclos, Vitor H Teixeira, Patrick Autissier, Yaron B Gesthalter, Marjan A Reinders-Luinge, Robert Terrano, Yves M Dumas, Gang Liu, Sarah A Mazzilli, Corry-Anke Brandsma and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 88 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Article
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  13. Review
  14. Article
  15. IL-33 Expression Is Lower in Current Smokers at both Transcriptomic and Protein Levels.American journal of respiratory and critical care medicine · 2023
    Article
  16. Article
  17. An update in club cell biology and its potential relevance to chronic obstructive pulmonary disease.American journal of physiology. Lung cellular and molecular physiology · 2023
    Review
  18. Article
  19. Basic Science Perspective on Engineering and Modeling the Large Airways.Advances in experimental medicine and biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 3 countries.

Grant E DuclosDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0002-8054-4889
Vitor H TeixeiraLungs for Living Research Centre, UCL Respiratory, University College London, London, UK.ORCID 0000-0003-0090-861X
Patrick AutissierBoston University Flow Cytometry Core Facility, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0002-3088-4201
Yaron B GesthalterDepartment of Medicine, University of California San Francisco School of Medicine, San Francisco, CA, USA.
Marjan A Reinders-LuingeUniversity of Groningen, University Medical Center Groningen, Department of Pathology and Medical Biology, Groningen, Netherlands.
Robert TerranoDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.
Yves M DumasDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.
Gang LiuDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0001-9270-6796
Sarah A MazzilliDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0002-9187-2722
Corry-Anke BrandsmaUniversity of Groningen, University Medical Center Groningen, Department of Pathology and Medical Biology, Groningen, Netherlands.ORCID 0000-0001-8911-3658
Maarten van den BergeUniversity of Groningen, University Medical Center Groningen, Department of Pulmonary Diseases, Groningen, Netherlands.
Sam M JanesLungs for Living Research Centre, UCL Respiratory, University College London, London, UK.ORCID 0000-0002-6634-5939
Wim TimensUniversity of Groningen, University Medical Center Groningen, Department of Pathology and Medical Biology, Groningen, Netherlands.ORCID 0000-0002-4146-6363
Marc E LenburgDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.
Avrum SpiraDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.
Joshua D CampbellDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0003-0780-8662
Jennifer BeaneDepartment of Medicine, Boston University School of Medicine, Boston, MA, USA.ORCID 0000-0002-6699-2132
Boston University · USUniversity Medical Center Groningen · NLUniversity College Hospital · GBUniversity College London · GBUniversity of California, San Francisco · US

Funding

BIOLOGY OF THE LUNG--MULTIDISCIPLINARY PROGRAMT32HL007035 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Darrell N. Kotton, JOSEPH P MIZGERD · 1985 to 2026
$24.3M
Medical Research Council G108/596NHLBI NIH HHS T32 HL007035Wellcome Trust
6 · The paper itself

Abstract

The human bronchial epithelium is composed of multiple distinct cell types that cooperate to defend against environmental insults. While studies have shown that smoking alters bronchial epithelial function and morphology, its precise effects on specific cell types and overall tissue composition are unclear. We used single-cell RNA sequencing to profile bronchial epithelial cells from six never and six current smokers. Unsupervised analyses led to the characterization of a set of toxin metabolism genes that localized to smoker ciliated cells, tissue remodeling associated with a loss of club cells and extensive goblet cell hyperplasia, and a previously unidentified peri-goblet epithelial subpopulation in smokers who expressed a marker of bronchial premalignant lesions. Our data demonstrate that smoke exposure drives a complex landscape of cellular alterations that may prime the human bronchial epithelium for disease.

Indexed as

BronchiEpitheliumGenetic HeterogeneityGoblet CellsHumansHyperplasiaPrecancerous ConditionsRespiratory MucosaSequence Analysis, RNASingle-Cell AnalysisSmokingTranscription, Genetic

Identifiers

PMID31844660
PMCPMC6905872
OpenAlexW2996720629

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.