Evidence map›Paper›PMID 31844068›Full record

ArticleNature communications2019

Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans.

Khadijah A Mitchell, Noah Nichols, Wei Tang, Jennifer Walling, Holly Stevenson, Marbin Pineda, Roxana Stefanescu, Daniel C Edelman, Andrew T Girvin, Adriana Zingone and 12 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. The Current Roadmap of Lung Cancer Biology, Genomics and Racial Disparity.International journal of molecular sciences · 2025
    Review
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  19. Association ofFrontiers in oncology · 2021
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 1 country.

Khadijah A MitchellLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-7639-9351
Noah NicholsLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-9309-1295
Wei TangLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-7089-4391
Jennifer WallingGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0003-0591-1287
Holly StevensonGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-6143-7615
Marbin PinedaGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Roxana StefanescuPalantir Technologies, 1025 Thomas Jefferson St, Washington, DC, 20007, USA.
Daniel C EdelmanGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Andrew T GirvinPalantir Technologies, 1025 Thomas Jefferson St, Washington, DC, 20007, USA.
Adriana ZingoneLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Sanju SinhaLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Elise BowmanLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Emily L RossiLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Rony F ArauzLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-7382-0913
Yuelin Jack ZhuGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Justin LackNIAID Collaborative Bioinformatics Resource, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Elizabeth WeingartnerPersonal Genome Diagnostics, Baltimore, MD, 21124, USA.
Joshua J WaterfallGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-3762-5050
Sharon R PineRutgers Cancer Institute of New Jersey, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-5318-0277
John SimmonsPersonal Genome Diagnostics, Baltimore, MD, 21124, USA.
Paul MeltzerGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Bríd M RyanLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA. Brid.Ryan@nih.gov.ORCID http://orcid.org/0000-0003-0038-131X
National Cancer Institute · USEPIR Technologies (United States) · USHuman Genome Sciences (United States) · USNational Institutes of Health · USRutgers, The State University of New Jersey · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Chang S Chan · 1997 to 2026
$94.5M
Discovery and therapeutic targeting of biological determinants of lung cancer health disparitiesR01CA239093 · NCI · UNIVERSITY OF COLORADO DENVER · PI PINE, SHARON R. · 2020 to 2025
$2.1M
NCI NIH HHS P30 CA072720NCI NIH HHS R01 CA239093
6 · The paper itself

Abstract

Reducing or eliminating persistent disparities in lung cancer incidence and survival has been challenging because our current understanding of lung cancer biology is derived primarily from populations of European descent. Here we show results from a targeted sequencing panel using NCI-MD Case Control Study patient samples and reveal a significantly higher prevalence of PTPRT and JAK2 mutations in lung adenocarcinomas among African Americans compared with European Americans. This increase in mutation frequency was validated with independent WES data from the NCI-MD Case Control Study and TCGA. We find that patients carrying these mutations have a concomitant increase in IL-6/STAT3 signaling and miR-21 expression. Together, these findings suggest the identification of these potentially actionable mutations could have clinical significance for targeted therapy and the enrollment of minority populations in clinical trials.

Indexed as

Adenocarcinoma of LungAgedBlack or African AmericanCase-Control StudiesDNA Mutational AnalysisFemaleHealth Status DisparitiesHumansInterleukin-6Janus Kinase 2Lung NeoplasmsMaleMicroRNAsMiddle AgedMutationReceptor-Like Protein Tyrosine Phosphatases, Class 2IL6 protein, humanInterleukin-6JAK2 protein, humanJanus Kinase 2MicroRNAsMIRN21 microRNA, humanPTPRT protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 2STAT3 protein, humanSTAT3 Transcription Factor

Identifiers

PMID31844068
PMCPMC6915783
OpenAlexW2994620676

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.