Evidence map›Paper›PMID 31843888›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Reversible phosphorylation of Rpn1 regulates 26S proteasome assembly and function.

Xiaoyan Liu, Weidi Xiao, Yanan Zhang, Sandra E Wiley, Tao Zuo, Yingying Zheng, Natalie Chen, Lu Chen, Xiaorong Wang, Yawen Zheng and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  5. Promoting proteostasis by cAMP/PKA and cGMP/PKG.Trends in molecular medicine · 2025
    Review
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  11. DNA damage-induced proteasome phosphorylation controls substrate recognition and facilitates DNA repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Xiaoyan LiuLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Weidi XiaoState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Institute of Lifeomics, Beijing, P. R. China 102206.
Yanan ZhangLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Sandra E WileyDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093.
Tao ZuoState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Institute of Lifeomics, Beijing, P. R. China 102206.
Yingying ZhengLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Natalie ChenDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093.
Lu ChenLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Xiaorong WangDepartment of Physiology and Biophysics, University of California, Irvine, CA 92697.
Yawen ZhengLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Lan HuangDepartment of Physiology and Biophysics, University of California, Irvine, CA 92697.ORCID 0000-0002-3140-4687
Shixian LinLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058.
Anne N MurphyDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093.
Jack E DixonDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-8266-5449
Ping XuState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Institute of Lifeomics, Beijing, P. R. China 102206.
Xing GuoLife Sciences Institute, Zhejiang University, Hangzhou, P. R. China 310058; xguo@zju.edu.cn.ORCID 0000-0002-9794-1725
Zhejiang University · CNUniversity of California San Diego · USBeijing Proteome Research Center · CNUniversity of California, Irvine · US

Funding

Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
STUDIES ON PANCREATIC HORMONESR01DK018024 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIXON, JACK E, WORBY, CAROLYN ANN · 1986 to 2018
$2.1M
NIDDK NIH HHS R01 DK018024NIGMS NIH HHS R01 GM074830
6 · The paper itself

Abstract

The fundamental importance of the 26S proteasome in health and disease suggests that its function must be finely controlled, and yet our knowledge about proteasome regulation remains limited. Posttranslational modifications, especially phosphorylation, of proteasome subunits have been shown to impact proteasome function through different mechanisms, although the vast majority of proteasome phosphorylation events have not been studied. Here, we have characterized 1 of the most frequently detected proteasome phosphosites, namely Ser361 of Rpn1, a base subunit of the 19S regulatory particle. Using a variety of approaches including CRISPR/Cas9-mediated gene editing and quantitative mass spectrometry, we found that loss of Rpn1-S361 phosphorylation reduces proteasome activity, impairs cell proliferation, and causes oxidative stress as well as mitochondrial dysfunction. A screen of the human kinome identified several kinases including PIM1/2/3 that catalyze S361 phosphorylation, while its level is reversibly controlled by the proteasome-resident phosphatase, UBLCP1. Mechanistically, Rpn1-S361 phosphorylation is required for proper assembly of the 26S proteasome, and we have utilized a genetic code expansion system to directly demonstrate that S361-phosphorylated Rpn1 more readily forms a precursor complex with Rpt2, 1 of the first steps of 19S base assembly. These findings have revealed a prevalent and biologically important mechanism governing proteasome formation and function.

Indexed as

AnimalsCell LineCRISPR-Cas SystemsEnzyme AssaysGene Knock-In TechniquesHumansMembrane ProteinsMiceMice, KnockoutMice, TransgenicMitochondriaNuclear ProteinsOxidative StressPhosphoprotein PhosphatasesPhosphorylationProteasome Endopeptidase ComplexATP dependent 26S proteaseMembrane ProteinsNuclear ProteinsPhosphoprotein PhosphatasesProteasome Endopeptidase ComplexProtein Serine-Threonine KinasesProtein SubunitsPSMD14 protein, mouseribophorinRNA, Small InterferingRPN1 protein, humanSerineTrans-ActivatorsUBLCP1 protein, humangenetic code expansionphosphorylationPIMproteasomeUBLCP1

Identifiers

PMID31843888
PMCPMC6955308
OpenAlexW2996544086

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.