ArticleeLife2019
Combining genomics and epidemiology to analyse bi-directional transmission of
Open access · goldAbstract read
In one paragraph
Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.
0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
15.0field-weighted citation impact, top 1% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
50 citing papers in PubMed, 174 citations in OpenAlex.
- Uncovering the genomic landscape of Mycobacterium bovis in Wales.Scientific reports · 2026Article
- A phylogenetic contribution to understanding the panzootic spread of African swine fever: from the global to the local scale.Virus evolution · 2026Article
- A simulation model to predict the most efficient way to utilise operational resources when vaccinating badgers against bTB.PloS one · 2026Article
- Vaccinating wild badgers against bovine tuberculosis: an overview of 16 years of vaccine delivery in England.Frontiers in veterinary science · 2026Article
- Metabolomic changes in the peripheral blood of wild trapped badgers (Meles meles) correlate with bovine tuberculosis (Mycobacterium bovis) infection status.BMC veterinary research · 2025Article
- The genomic diversity and spatial patterns of Mycobacterium bovis in Ireland revealed by whole genome sequencing.Irish veterinary journal · 2025Article
- Integrating whole-genome sequencing and epidemiology to characterise Mycobacterium bovis transmission in Ireland: a proof of concept.Irish veterinary journal · 2025Article
- Sociality and kinship constrain the free-mixing of pathogens in a wild mammal host population.Proceedings. Biological sciences · 2025Article
- Landscape as a Shared Space for Badgers and Cattle: Insights Into Indirect Contact and Bovine Tuberculosis Transmission Risk.Ecology and evolution · 2025Article
- Influence of Sequencing Technology on Pangenome-Level Analysis and Detection of Antimicrobial Resistance Genes in ESKAPE Pathogens.Open forum infectious diseases · 2025Article
- SIRE 2.0: a novel method for estimating polygenic host effects underlying infectious disease transmission, and analytical expressions for prediction accuracies.Genetics, selection, evolution : GSE · 2025Article
- Tuberculosis in found dead badgers at the edge of the expanding bovine tuberculosis epidemic.Scientific reports · 2025Article
- Enhanced analysis of the genomic diversity ofFrontiers in microbiology · 2025Article
- Bovine tuberculosis model validation against a field study of badger vaccination with selective culling.PloS one · 2025Article
- Efficient modelling of infectious diseases in wildlife: A case study of bovine tuberculosis in wild badgers.PLoS computational biology · 2024Article
- Challenge Dose Titration in aInternational journal of molecular sciences · 2024Article
- Genomic insights into anthropozoonotic tuberculosis in captive sun bears (Helarctos malayanus) and an Asiatic black bear (Ursus thibetanus) in Cambodia.Scientific reports · 2024Article
- Difference in differences analysis evaluates the effects of the badger control policy on bovine tuberculosis in England.Scientific reports · 2024Article
- Whole-Genome sequencing in routineMicrobial genomics · 2024Article
- Badger Ecology, Bovine Tuberculosis, and Population Management: Lessons from the Island of Ireland.Transboundary and emerging diseases · 2024Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
18 authors at 10 institutions in 2 countries.
Joseph CrispellSchool of Veterinary Medicine, Veterinary Sciences Centre, University College Dublin, Dublin, Ireland.ORCID 0000-0002-0364-7112
Clare H BentonNational Wildlife Management Centre, Animal & Plant Health Agency (APHA), London, United Kingdom.
Daniel BalazRoslin Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-3958-8748
Nicola De MaioEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom.
Assel AhkmetovaInstitute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Adrian AllenAgri-Food & Biosciences Institute Northern Ireland (AFBNI), Belfast, United Kingdom.
Roman BiekInstitute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Eleanor L PreshoAgri-Food & Biosciences Institute Northern Ireland (AFBNI), Belfast, United Kingdom.
James DaleAnimal & Plant Health Agency (APHA), London, United Kingdom.
Glyn HewinsonCentre for Bovine Tuberculosis, Institute of Biological, Environmental and Rural Sciences, University of Aberystwyth, Aberystwyth, United Kingdom.
Samantha J LycettRoslin Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-3159-596X
Javier Nunez-GarciaGenomics Medicine Ireland, Dublin, Ireland.
Robin A SkuceAgri-Food & Biosciences Institute Northern Ireland (AFBNI), Belfast, United Kingdom.
Hannah TrewbyQuadram Institute Bioscience, Norwich, United Kingdom.
Daniel J WilsonBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-0940-3311
Ruth N ZadoksInstitute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, United Kingdom.ORCID 0000-0002-1164-8000
Richard J DelahayNational Wildlife Management Centre, Animal & Plant Health Agency (APHA), London, United Kingdom.
Rowland Raymond KaoRoslin Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-0919-6401
Agri Food and Biosciences Institute · GBAnimal and Plant Health Agency · GBRoslin Institute · GBUniversity of Glasgow · GBEuropean Bioinformatics Institute · GBGenomics Medicine (Ireland) · IEInstitute of Biological, Environmental and Rural Sciences · GBQuadram Institute · GBUniversity College Dublin · IEUniversity of Oxford · GB
Funding
Biotechnology and Biological Sciences Research Council BB/L010569/1Biotechnology and Biological Sciences Research Council BB/L010569/2Biotechnology and Biological Sciences Research Council BB/P010598/1Biotechnology and Biological Sciences Research Council BBS/E/D/20002173Science Foundation Ireland 16/BBSRC/3390Wellcome Trust 081696/Z/06/ZWellcome Trust 714 101237/Z/13/Z
Abstract
Quantifying pathogen transmission in multi-host systems is difficult, as exemplified in bovine tuberculosis (bTB) systems, but is crucial for control. The agent of bTB,
Indexed as
AnimalsAnimals, WildBayes TheoremCattleDisease ReservoirsGenome, BacterialGenomicsHost-Pathogen InteractionsMustelidaeMycobacterium bovisPhylogenyTuberculosis, Bovinebadgerbovine tuberculosiscattleepidemiologyglobal healthinfectious diseasemicrobiologyMycobacterium boviswhole genome sequencing
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.