Evidence map›Paper›PMID 31842807›Full record

ArticleBMC medical genetics2019

Novel mutations identified in Chinese families with autosomal dominant congenital cataracts by targeted next-generation sequencing.

Shan Li, Jianfei Zhang, Yixuan Cao, Yi You, Xiuli Zhao

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Abnormal function ofInternational journal of ophthalmology · 2024
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  6. Article
  7. Article
  8. Biallelic Variants inInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Shan LiDepartment of Medical Genetics, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences - School of Basic Medicine Peking Union Medical College, 5 Dong Dan San Tiao, Dongcheng District, Beijing, 100005, People's Republic of China.
Jianfei ZhangThe No.4 hospital (eye hospital) of Zhangjiakou, Zhangjiakou, 075000, People's Republic of China.
Yixuan CaoDepartment of Medical Genetics, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences - School of Basic Medicine Peking Union Medical College, 5 Dong Dan San Tiao, Dongcheng District, Beijing, 100005, People's Republic of China.
Yi YouDepartment of Medical Genetics, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences - School of Basic Medicine Peking Union Medical College, 5 Dong Dan San Tiao, Dongcheng District, Beijing, 100005, People's Republic of China.
Xiuli ZhaoDepartment of Medical Genetics, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences - School of Basic Medicine Peking Union Medical College, 5 Dong Dan San Tiao, Dongcheng District, Beijing, 100005, People's Republic of China. xiulizhao@ibms.pumc.edu.cn.ORCID 0000-0001-8238-6311
Chinese Academy of Medical Sciences & Peking Union Medical College · CNZhangjiakou Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCongenital cataract is a clinically and genetically heterogeneous visual impairment. The aim of this study was to identify causative mutations in five unrelated Chinese families diagnosed with congenital cataracts.

methodsDetailed family history and clinical data were collected, and ophthalmological examinations were performed using slit-lamp photography. Genomic DNA was extracted from peripheral blood of all available members. Thirty-eight genes associated with cataract were captured and sequenced in 5 typical nonsyndromic congenital cataract probands by targeted next-generation sequencing (NGS), and the results were confirmed by Sanger sequencing. Bioinformatics analysis was performed to predict the functional effect of mutant genes.

resultsResults from the DNA sequencing revealed five potential causative mutations: c.154 T > C(p.F52 L) in GJA8 of Family 1, c.1152_1153insG(p.S385Efs*83) in GJA3 of Family 2, c.1804 G > C(p.G602R) in BFSP1 of Family 3, c.1532C > T(p.T511 M) in EPHA2 of Family 4 and c.356G > A(p.R119H) in HSF4 of Family 5. These mutations co-segregated with all affected individuals in the families and were not found in unaffected family members nor in 50 controls. Bioinformatics analysis from several prediction tools supported the possible pathogenicity of these mutations.

conclusionsIn this study, we identified five novel mutations (c.154 T > C in GJA8, c.1152_1153insG in GJA3, c.1804G > C in BFSP1, c.1532C > T in EPHA2, c.356G > A in HSF4) in five Chinese families with hereditary cataracts, respectively. NGS can be used as an effective tool for molecular diagnosis of genetically heterogeneous disorders such as congenital cataract, and the results can provide more effective clinical diagnosis and genetic counseling for the five families.

Indexed as

MutationCataractChinaComputational BiologyFemaleHigh-Throughput Nucleotide SequencingHumansMalePedigreePhacoemulsificationVisual AcuityBioinformatics analysisCongenital cataractGene mutationNext-generation sequencing

Identifiers

PMID31842807
PMCPMC6915918
OpenAlexW2996562314

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.