Evidence map›Paper›PMID 31842759›Full record

ArticleBMC plant biology2019

The plant defensin gene AtPDF2.1 mediates ammonium metabolism by regulating glutamine synthetase activity in Arabidopsis thaliana.

Junyue Yao, Jin-Song Luo, Yan Xiao, Zhenhua Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Bioactive Nitrosylated and NitratedMolecules (Basel, Switzerland) · 2022
    Article
  4. International journal of molecular sciences · 2021
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Junyue YaoSouthern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China.
Jin-Song LuoSouthern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China. 0609020317@163.com.
Yan XiaoSouthern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China.
Zhenhua ZhangSouthern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China. zhzh1468@163.com.ORCID http://orcid.org/0000-0002-8877-1090
Hunan Agricultural University · CNSoil and Fertilizer Institute of Hunan Province · CN

Funding

China Postdoctoral Science Foundation 2018M630900Innovative Research Groups of the Natural Science Foundation of Hunan Province 2019JJ10003National Key R&D Program of China 2017YFD0200100; 2017YFD0200103National Natural Science Foundation of China 31800202Province Key R&D Program of Hunan 2018NK1010
6 · The paper itself

Abstract

backgroundIn plants, ammonium metabolism is particularly important for converting absorbed nitrogen into amino acids. However, the molecular mechanism underlying this conversion remains largely unknown.

resultsUsing wild type Arabidopsis thaliana (Col-0) and AtPDF2.1 mutants (pdf2.1-1 and pdf2.1-2), we found that the small cysteine-rich peptide AtPDF2.1, a plant defensin, is involved in regulating ammonium metabolism in the shoot. Ammonium significantly induced the expression of AtPDF2.1 in the shoot and root, particularly in root xylem vascular bundles, as demonstrated by histochemical analysis. Subcellular localization analysis revealed that AtPDF2.1 was localized to the cell wall. Ammonium concentration was higher in the shoot of mutants than in the shoot of Col-0, but no differences were found for total nitrogen content, root ammonium concentration, and the expression of the ammonium transporter gene AtAMT2.1. The activity of glutamine synthetase was significantly decreased in mutants, and the glutamine synthetase family genes GLN1.3 and GLN1.5 were significantly downregulated in mutants compared to Col-0. The activity of nitrate reductase showed no difference between mutants and Col-0.

conclusionsOverall, these data suggest that AtPDF2.1 affects ammonium metabolism by regulating the expression of GLN1.3 and GLN1.5 through a yet unidentified mechanism.

Indexed as

Gene Expression Regulation, PlantAmmonium CompoundsArabidopsisArabidopsis ProteinsHomeodomain ProteinsAmmonium CompoundsArabidopsis ProteinsHomeodomain ProteinsPDF2 protein, ArabidopsisAmmonium metabolismArabidopsis thalianaGLN1.3GLN1.5PDF2.1Plant defensins

Identifiers

PMID31842759
PMCPMC6916093
OpenAlexW2995120450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.