Evidence map›Paper›PMID 31842752›Full record

ArticleBMC genomics2019

Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung.

David L Ebenezer, Panfeng Fu, Yashaswin Krishnan, Mark Maienschein-Cline, Hong Hu, Segun Jung, Ravi Madduri, Zarema Arbieva, Anantha Harijith, Viswanathan Natarajan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Identification of KeyInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. NOX4 MediatesAntioxidants (Basel, Switzerland) · 2021
    Article
  13. Morpholino Analogues of Fingolimod as Novel and Selective S1PInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

David L EbenezerDepartment of Pharmacology, University of Illinois, Chicago, USA.
Panfeng FuDepartment of Pharmacology, University of Illinois, Chicago, USA.
Yashaswin KrishnanDepartment of Pharmacology, University of Illinois, Chicago, USA.
Mark Maienschein-ClineDepartment of Bioinformatics, University of Illinois, Chicago, USA.
Hong HuDepartment of Bioinformatics, University of Illinois, Chicago, USA.
Segun JungGlobus, University of Chicago, Chicago, IL, USA.
Ravi MadduriGlobus, University of Chicago, Chicago, IL, USA.
Zarema ArbievaDepartment of Core Genomics Facility, University of Illinois, Chicago, USA.
Anantha HarijithDepartment of Pediatrics, University of Illinois, Room 3139, COMRB Building, 909, South Wolcott Avenue, Chicago, IL, 60612, USA. Harijith@uic.edu.ORCID http://orcid.org/0000-0002-4868-3862
Viswanathan NatarajanDepartment of Pharmacology, University of Illinois, Chicago, USA.
University of Illinois Chicago · USArgonne National Laboratory · USUniversity of Chicago · US

Funding

TRPC6 Regulation of Lung Endothelial Barrier FunctionP01HL060678 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MALIK, ASRAR B. · 2000 to 2020
$40.1M
Role of novel SphK1 inhibitor, PF543 in therapy of Bronchopulmonary dysplasia and Airway remodelingR01HD090887 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI HARIJITH, ANANTHA · 2018 to 2022
$1.5M
NHLBI NIH HHS P01 HL060678NICHD NIH HHS R01 HD090887
6 · The paper itself

Abstract

backgroundPseudomonas aeruginosa (PA) is an opportunistic Gram-negative bacterium that causes serious life threatening and nosocomial infections including pneumonia. PA has the ability to alter host genome to facilitate its invasion, thus increasing the virulence of the organism. Sphingosine-1- phosphate (S1P), a bioactive lipid, is known to play a key role in facilitating infection. Sphingosine kinases (SPHK) 1&2 phosphorylate sphingosine to generate S1P in mammalian cells. We reported earlier that Sphk2

resultsTwo-way analysis of variance (ANOVA) analysis was performed and differentially expressed genes following PA infection were identified using whole transcriptome of Sphk2

conclusionUsing Sphk2

Indexed as

Gene DeletionGene Regulatory NetworksAnalysis of VarianceAnimalsDisease Models, AnimalFemaleGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingLungMicePhosphotransferases (Alcohol Group Acceptor)Pseudomonas aeruginosaPseudomonas InfectionsRNA-SeqSphingosine KinasePhosphotransferases (Alcohol Group Acceptor)Sphingosine Kinasesphingosine kinase 2, mouseGenomics, bacterial resistancePneumoniaPseudomonas aeruginosaSphingolipidsSphingosine kinase 2

Identifiers

PMID31842752
PMCPMC6916461
OpenAlexW2996435713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.