Evidence map›Paper›PMID 31842750›Full record

ArticleBMC genomics2019

A phenomics-based approach for the detection and interpretation of shared genetic influences on 29 biochemical indices in southern Chinese men.

Yanling Hu, Aihua Tan, Lei Yu, Chenyang Hou, Haofa Kuang, Qunying Wu, Jinghan Su, Qingniao Zhou, Yuanyuan Zhu, Chenqi Zhang and 13 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. ALDH2 variance in disease and populations.Disease models & mechanisms · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 1 institution in 1 country.

Yanling HuCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Aihua TanCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Lei YuCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Chenyang HouDepartment of Information and Management, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Haofa KuangLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Qunying WuDepartment of Biochemistry and Molecular Biology, School of Pre-Clinical Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Jinghan SuCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Qingniao ZhouDepartment of Biochemistry and Molecular Biology, School of Pre-Clinical Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Yuanyuan ZhuLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Chenqi ZhangLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Wei WeiLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Lianfeng LiDepartment of Information and Management, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Weidong LiLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Yuanjie HuangLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Hongli HuangLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Xing XieLife Sciences Institute, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Tingxi LuDepartment of Information and Management, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Haiying ZhangCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Xiaobo YangCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Yong GaoCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Tianyu LiCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Yonghua JiangCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China. jiangyonghua@126.com.ORCID http://orcid.org/0000-0003-2927-4921
Zengnan MoCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China. zengnanmo@126.com.
Guangxi Medical University · CN

Funding

Guangxi Colleges and Universities Key Laboratory of Biological Molecular Medicine Research Foundation GXBMR201603Innovative Research Group Project of the National Natural Science Foundation of China 81770759National Natural Science Foundation of China 81460388National Natural Science Foundation of China 81472414Natural Science Foundation of Guangxi Province 2015GXNSFBB139008the National Natural Science Foundation of China 81560608Youth Science Foundation of Guangxi Medical University GXMUYSF201603
6 · The paper itself

Abstract

backgroundPhenomics provides new technologies and platforms as a systematic phenome-genome approach. However, few studies have reported on the systematic mining of shared genetics among clinical biochemical indices based on phenomics methods, especially in China. This study aimed to apply phenomics to systematically explore shared genetics among 29 biochemical indices based on the Fangchenggang Area Male Health and Examination Survey cohort.

resultA total of 1999 subjects with 29 biochemical indices and 709,211 single nucleotide polymorphisms (SNPs) were subjected to phenomics analysis. Three bioinformatics methods, namely, Pearson's test, Jaccard's index, and linkage disequilibrium score regression, were used. The results showed that 29 biochemical indices were from a network. IgA, IgG, IgE, IgM, HCY, AFP and B12 were in the central community of 29 biochemical indices. Key genes and loci associated with metabolism traits were further identified, and shared genetics analysis showed that 29 SNPs (P < 10

conclusionAll these findings indicated a network of shared genetics and 29 biochemical indices, which will help fully understand the genetics participating in biochemical metabolism.

Indexed as

Quantitative Trait Loci3T3-L1 CellsAdultAgedAldehyde Dehydrogenase, MitochondrialAnimalsCell DifferentiationChinaGenome-Wide Association StudyHumansLinkage DisequilibriumMaleMiceMiddle AgedPhenomicsPolymorphism, Single NucleotideAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanALDH2 protein, mouseBiochemical indicesFAMHES cohortLipid metabolismPhenomicsShared genetics

Identifiers

PMID31842750
PMCPMC6916074
OpenAlexW2996148454

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.