Evidence map›Paper›PMID 31840817›Full record

ArticleJournal of cellular physiology2020

Derivation of notochordal cells from human embryonic stem cells reveals unique regulatory networks by single cell-transcriptomics.

Martha E Diaz-Hernandez, Nazir M Khan, Camila M Trochez, Tim Yoon, Peter Maye, Steven M Presciutti, Greg Gibson, Hicham Drissi

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular physiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Martha E Diaz-HernandezDepartment of Orthopaedics, Emory University, Atlanta, Georgia.
Nazir M KhanDepartment of Orthopaedics, Emory University, Atlanta, Georgia.
Camila M TrochezCenter for Integrative Genomics, Georgia Tech, Atlanta, Georgia.
Tim YoonDepartment of Orthopaedics, Emory University, Atlanta, Georgia.
Peter MayeUConn Health Center, University of Connecticut, Farmington, Connecticut.
Steven M PresciuttiDepartment of Orthopaedics, Emory University, Atlanta, Georgia.
Greg GibsonCenter for Integrative Genomics, Georgia Tech, Atlanta, Georgia.
Hicham DrissiDepartment of Orthopaedics, Emory University, Atlanta, Georgia.ORCID 0000-0002-3322-281X
Emory University · USGeorgia Institute of Technology · USUConn Health · US

Funding

Skeletal Phenotyping of Heterozygotes from IMPC Embryonic Lethal LinesR01HD098636 · NICHD · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI MAYE, PETER, ROWE, DAVID W. · 2019 to 2023
$2.8M
Use of hESC-Derived Progenitors for the Treatment of Degenerated DiscsR21AR067903 · NIAMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI DRISSI, MOULAY HICHAM · 2015 to 2016
$382k
NIAMS NIH HHS R21 AR067903NICHD NIH HHS R01 HD098636
6 · The paper itself

Abstract

Intervertebral disc degeneration (IDD) is a public health dilemma as it is associated with low back and neck pain, a frequent reason for patients to visit the physician. During IDD, nucleus pulposus (NP), the central compartment of intervertebral disc (IVD) undergo degeneration. Stem cells have been adopted as a promising biological source to regenerate the IVD and restore its function. Here, we describe a simple, two-step differentiation strategy using a cocktail of four factors (LDN, AGN, FGF, and CHIR) for efficient derivation of notochordal cells from human embryonic stem cells (hESCs). We employed a CRISPR/Cas9 based genome-editing approach to knock-in the mCherry reporter vector upstream of the 3' untranslated region of the Noto gene in H9-hESCs and monitored notochordal cell differentiation. Our data show that treatment of H9-hESCs with the above-mentioned four factors for 6 days successfully resulted in notochordal cells. These cells were characterized by morphology, immunostaining, and gene and protein expression analyses for established notochordal cell markers including FoxA2, SHH, and Brachyury. Additionally, pan-genomic high-throughput single cell RNA-sequencing revealed an efficient and robust notochordal differentiation. We further identified a key regulatory network consisting of eight candidate genes encoding transcription factors including PAX6, GDF3, FOXD3, TDGF1, and SOX5, which are considered as potential drivers of notochordal differentiation. This is the first single cell transcriptomic analysis of notochordal cells derived from hESCs. The ability to efficiently obtain notochordal cells from pluripotent stem cells provides an additional tool to develop new cell-based therapies for the treatment of IDD.

Indexed as

BiomarkersBrachyury ProteinCell DifferentiationFetal ProteinsForkhead Transcription FactorsGene Regulatory NetworksGPI-Linked ProteinsGrowth Differentiation Factor 3Human Embryonic Stem CellsHumansInduced Pluripotent Stem CellsIntercellular Signaling Peptides and ProteinsIntervertebral DiscIntervertebral Disc DegenerationNeoplasm ProteinsNotochordBiomarkersBrachyury ProteinFetal ProteinsForkhead Transcription FactorsFOXD3 protein, humanGDF3 protein, humanGPI-Linked ProteinsGrowth Differentiation Factor 3Intercellular Signaling Peptides and ProteinsNeoplasm ProteinsPAX6 Transcription FactorSOX5 protein, humanSOXD Transcription FactorsT-Box Domain ProteinsTDGF1 protein, humancell differentiationCRISPR/Cas9gene-networknotochordRNA-sequencingsingle cell transcriptomicsstem cell

Identifiers

PMID31840817
PMCPMC7056550
OpenAlexW2994701509

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.