Evidence map›Paper›PMID 31840205›Full record

ArticleJournal of cell communication and signaling2019

Temporal VEGFA responsive genes in HUVECs: Gene signatures and potential ligands/receptors fine-tuning angiogenesis.

P Sunitha, Rajesh Raju, C K Sajil, C S Abhinand, Achuthsankar S Nair, Oommen V Oommen, V S Sugunan, P R Sudhakaran

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell communication and signaling, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. A molecular network map of orexin-orexin receptor signaling system.Journal of cell communication and signaling · 2023
    Article
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

P SunithaDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
Rajesh RajuRajiv Gandhi Centre for Biotechnology, KINFRA Campus, Thiruvananthapuram, Kerala, 695585, India. rajrrnbt@gmail.com.
C K SajilDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
C S AbhinandDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
Achuthsankar S NairDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
Oommen V OommenDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
V S SugunanDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India.
P R SudhakaranDepartment of Computational Biology & Bioinformatics, Research Centre, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, 695581, India. prslab@gmail.com.
University of Kerala · INRajiv Gandhi Centre for Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vascular Endothelial Growth Factor-A (VEGFA) signaling is crucial to the cellular processes involved in angiogenesis. Previously, we assembled a network of molecular reactions induced by VEGFA in human umbilical vein endothelial cell populations. Considering transcriptome as a read-out of the transcriptional and epigenomic regulatory network, we now present an analysis of VEGFA-induced temporal transcriptome datasets from 6 non-synchronized studies. From these datasets, applying a confidence criterion, a set of early VEGFA-responsive signature genes were derived and evaluated for their co-expression potential with respect to multiple cancer gene expression datasets. Further, inclusive of a set of ligand-receptor pairs, a list of ligand and receptor signaling systems that potentially fine-tune the endothelial cell functions subsequent to VEGFA signaling were also derived. We believe that a number of these signaling systems would concurrently and/or hierarchically fine-tune the signaling network of endothelial cell populations towards the processes associated with angiogenesis through autocrine, paracrine, juxtacrine, and matricrine modes. By further analysis of published literature on VEGFA signaling, we also present an improved update-version of our previous VEGFA signaling network model in endothelial cells as a platform for analysis of cross-talk with these signaling systems.

Indexed as

AngiogenesisCross-talkGene expressionHUVECsSignatureVEGF

Identifiers

PMID31840205
PMCPMC6946775
OpenAlexW2996641374

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.