Evidence map›Paper›PMID 31840082›Full record

ArticleNPJ precision oncology2019

Interferon-γ signaling is associated with

Horacio Cardenas, Guanglong Jiang, Jessica Thomes Pepin, J Brandon Parker, Salvatore Condello, Kenneth P Nephew, Harikrishna Nakshatri, Debabrata Chakravarti, Yunlong Liu, Daniela Matei

Open access · goldAbstract read
In one paragraph

Article in NPJ precision oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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  9. Ovarian cancer cell fate regulation by the dynamics between saturated and unsaturated fatty acids.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Horacio Cardenas *1Department of Obstetrics and Gynecology, Northwestern University, Chicago, IL USA.
Guanglong Jiang *2Department of Medical and Molecular Genetics, Indiana University, Indianapolis, IN USA.
Jessica Thomes Pepin *4Department of Obstetrics and Gynecology, Indiana University, Indianapolis, IN USA.
J Brandon Parker1Department of Obstetrics and Gynecology, Northwestern University, Chicago, IL USA.
Salvatore Condello1Department of Obstetrics and Gynecology, Northwestern University, Chicago, IL USA.
Kenneth P Nephew4Department of Obstetrics and Gynecology, Indiana University, Indianapolis, IN USA.
Harikrishna NakshatriMelvin and Bren Simon Cancer Center, Indianapolis, IN USA.ORCID 0000-0001-8876-0052
Debabrata Chakravarti1Department of Obstetrics and Gynecology, Northwestern University, Chicago, IL USA.
Yunlong Liu2Department of Medical and Molecular Genetics, Indiana University, Indianapolis, IN USA.
Daniela Matei1Department of Obstetrics and Gynecology, Northwestern University, Chicago, IL USA.
Northwestern University · USIndiana University Health · USUniversity of Indianapolis · US

Funding

A Low-Dose Decitabine Strategy for Restoring Ovarian Cancer SensitivityR21CA133877 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI MATEI, DANIELA E · 2008 to 2009
$683k
NCI NIH HHS R21 CA133877
6 · The paper itself

Abstract

Loss-of-function mutations of the breast cancer type 1 susceptibility protein (BRCA1) are associated with breast (BC) and ovarian cancer (OC). To identify gene signatures regulated by epigenetic mechanisms in OC cells carrying BRCA1 mutations, we assessed cellular responses to epigenome modifiers and performed genome-wide RNA- and chromatin immunoprecipitation-sequencing in isogenic OC cells UWB1.289 (carrying a BRCA1 mutation, BRCA1-null) and UWB1.289 transduced with wild-type BRCA1 (BRCA1+). Increased sensitivity to histone deacetylase inhibitors (HDACi) was observed in BRCA1-null vs. BRCA1+ cells. Gene expression profiles of BRCA1-null vs. BRCA1+ cells and treated with HDACi were integrated with chromatin mapping of histone H3 lysine 9 or 27 acetylation. Gene networks activated in BRCA1-null vs. BRCA1 + OC cells related to cellular movement, cellular development, cellular growth and proliferation, and activated upstream regulators included

Indexed as

EpigeneticsOvarian cancer

Identifiers

PMID31840082
PMCPMC6897992
OpenAlexW2992880382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.