Evidence map›Paper›PMID 31838648›Full record

ArticleDevelopment genes and evolution2020

Gene duplication and functional divergence of the zebrafish otospiralin genes.

Aissette Baanannou, Sepand Rastegar, Amal Bouzid, Masanari Takamiya, Vanessa Gerber, Amal Souissi, Tanja Beil, Olfa Jrad, Uwe Strähle, Saber Masmoudi

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Development genes and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Aissette BaanannouLaboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, Sfax, Tunisia. aissette.baanannou@yahoo.fr.
Sepand RastegarInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany.
Amal BouzidLaboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, Sfax, Tunisia.
Masanari TakamiyaInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany.
Vanessa GerberInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany.
Amal SouissiLaboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, Sfax, Tunisia.
Tanja BeilInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany.
Olfa JradLaboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, Sfax, Tunisia.
Uwe SträhleInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany.
Saber MasmoudiLaboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, Sfax, Tunisia.
Centre of Biotechnology of Sfax · TNKarlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Otospiralin (OTOSP) is a small protein of unknown function, expressed in fibrocytes of the inner ear and required for normal cochlear auditory function. Despite its conservation from fish to mammals, expression of otospiralin was only investigated in mammals. Here, we report for the first time the expression profile of OTOS orthologous genes in zebrafish (Danio rerio): otospiralin and si:ch73-23l24.1 (designated otospiralin-like). In situ hybridization analyses in zebrafish embryos showed a specific expression of otospiralin-like in notochord (from 14 to 48 hpf) and similar expression patterns for otospiralin and otospiralin-like in gut (from 72 to 120 hpf), swim bladder (from 96 to 120 hpf) and inner ear (at 120 hpf). Morpholino knockdown of otospiralin and otospiralin-like showed no strong change of the body structure of the embryos at 5 dpf and the inner ear was normally formed. Nevertheless, knockdown embryos showed a reduced number of kinocilia in the lateral crista, indicating that these genes play an important role in kinocilium formation. RT-qPCR revealed that otospiralin is highly expressed in adult zebrafish inner ear comparing to the others analyzed tissues as previously shown for mice. Interestingly, otospiralin-like was not detected in the inner ear which suggests that otospiralin have a more important function in hearing than otospiralin-like. Phylogenetic analysis of otospiralin proteins in vertebrates indicated the presence of two subgroups and supported the functional divergence observed in zebrafish for otospiralin and otospiralin-like genes. This study offers the first insight into the expression of otospiralin and otospiralin-like in zebrafish. Expression data point to an important role for otospiralin in zebrafish hearing and a specific role for otospiralin-like in notochord vacuolization.

Indexed as

Gene DuplicationAmino Acid SequenceAnimalsEar, InnerEmbryo, NonmammalianGene Knockdown TechniquesMiceMorpholinosPhylogenyTranscriptomeVertebratesZebrafishMorpholinosInner earKinociliaNotochordOtospiralinOtospiralin-likeZebrafish

Identifiers

PMID31838648
OpenAlexW2996539995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.