Evidence map›Paper›PMID 31838628›Full record

ArticleJournal of assisted reproduction and genetics2020

Conditions of embryo culture from days 5 to 7 of development alter the DNA methylome of the bovine fetus at day 86 of gestation.

Yahan Li, Paula Tríbulo, Mohammad Reza Bakhtiarizadeh, Luiz Gustavo Siqueira, Tieming Ji, Rocío Melissa Rivera, Peter James Hansen

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Cytokines That Serve as Embryokines in Cattle.Animals : an open access journal from MDPI · 2021
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Yahan LiDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0003-3062-4626
Paula TríbuloInstituto de Reproduccion Animal Córdoba, X5145, Córdoba, Argentina, Spain.ORCID http://orcid.org/0000-0003-1739-8265
Mohammad Reza BakhtiarizadehDepartment of Animal and Poultry Science, College of Aburaihan, University of Tehran, Tehran, Iran.ORCID http://orcid.org/0000-0001-5336-6987
Luiz Gustavo SiqueiraEmbrapa Gado de Leite, Juiz de Fora, Minas Gerais, 36038-330, Brazil.ORCID http://orcid.org/0000-0002-2800-5829
Tieming JiDepartment of Statistics, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0002-9832-9618
Rocío Melissa RiveraDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0002-1915-5892
Peter James HansenDepartment of Animal Sciences, University of Florida, Gainesville, FL, USA. pjhansen@ufl.edu.ORCID http://orcid.org/0000-0003-3061-9333
University of Missouri · USNational University of Villa María · ARSanta Fe College · USUniversity of Tehran · IR

Funding

Sexual dimorphism in developmental programming caused by CSF2R01HD088352 · NICHD · UNIVERSITY OF FLORIDA · PI HANSEN, PETER J. · 2017 to 2021
$1.8M
NICHD NIH HHS R01 HD088352
6 · The paper itself

Abstract

purposeWe tested whether in vitro production (IVP) causes changes in DNA methylation in fetal liver and skeletal muscle and if exposure of cultured embryos to colony-stimulating factor 2 (CSF2) alters DNA methylation.

methodsFemale fetuses were produced by artificial insemination or transfer of an IVP embryo. Embryos were treated from days 5 to 7 after fertilization with CSF2 or vehicle. DNA methylation in fetal liver and skeletal muscle was determined by post-bisulfite adaptor tagging-based sequencing. The degree of DNA methylation for CpG sites in 50-bp windows of the promoter region 500 bp upstream of the transcriptional start site was compared between treatments.

resultsFor liver, there were 12 genes (6% of those analyzed) in which DNA methylation was affected by treatment, with one 50-bp window per gene affected by treatment. For muscle, the degree of DNA methylation was affected by treatment for 32 windows (19% of the total windows analyzed) representing 28 distinct genes (23% of analyzed genes). For 19 of the 28 genes in muscle, the greatest deviation in DNA methylation was for the CSF2 group.

conclusionResults are consistent with alterations in the methylome being one of the mechanisms by which IVP can result in altered fetal development and postnatal function in the resultant offspring. In addition, results indicate that maternally derived cell-signaling molecules can regulate the pattern of DNA methylation.

Indexed as

AnimalsBlastocystCattleDNA MethylationEmbryo Culture TechniquesEmbryo, MammalianEmbryonic DevelopmentEpigenomeFemaleFertilization in VitroGene Expression Regulation, DevelopmentalInsemination, ArtificialPregnancyCSF2DNA methylationFetal programmingIn vitro–produced embryo

Identifiers

PMID31838628
PMCPMC7056789
OpenAlexW2995380875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.