Evidence map›Paper›PMID 31836710›Full record

ArticleNature communications2019

Molecular determinants of nephron vascular specialization in the kidney.

David M Barry, Elizabeth A McMillan, Balvir Kunar, Raphael Lis, Tuo Zhang, Tyler Lu, Edward Daniel, Masataka Yokoyama, Jesus M Gomez-Salinero, Angara Sureshbabu and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
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  9. Review
  10. Engineered 3D immuno-glial-neurovascular human miBrain model.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Microenvironmental determinants of endothelial cell heterogeneity.Nature reviews. Molecular cell biology · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Dissecting endothelial cell heterogeneity with new tools.Cell regeneration (London, England) · 2025
    Review
  18. Article
  19. Review
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

David M BarryDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA. dbarry553@gmail.com.
Elizabeth A McMillanDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Balvir KunarDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Raphael LisDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Tuo ZhangGenomics Resources Core Facility, Weill Cornell Medicine, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0001-5396-918X
Tyler LuDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Edward DanielDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA.ORCID http://orcid.org/0000-0003-3208-9655
Masataka YokoyamaDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Jesus M Gomez-SalineroDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Angara SureshbabuDivision of Nephrology and Hypertension, Weill Cornell Medicine, New York, NY, 10065, USA.
Ondine CleaverDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA.
Annarita Di LorenzoPathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Mary E ChoiDivision of Nephrology and Hypertension, Weill Cornell Medicine, New York, NY, 10065, USA.
Jenny XiangGenomics Resources Core Facility, Weill Cornell Medicine, New York, NY, 10065, USA.
David RedmondDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Sina Y RabbanyDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA.
Thangamani MuthukumarDivision of Nephrology and Hypertension, Weill Cornell Medicine, New York, NY, 10065, USA.
Shahin RafiiDivision of Regenerative Medicine, Ansary Stem Cell Institute, Weill Cornell Medicine, New York, NY, 10065, USA. srafii@med.cornell.edu.
Cornell University · USThe University of Texas Southwestern Medical Center · USHofstra University · US

Funding

Adaptable tissue-specific endothelial cells for organ regenerationR35HL150809 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Shahin Rafii · 2020 to 2026
$7.1M
The Role of HEME Oxygenase in Hyperoxic Lung InjuryR01HL055330 · NHLBI · YALE UNIVERSITY · PI CHOI, AUGUSTINE M, CHOI, MARY E · 1998 to 2021
$6.6M
HEME OXYGENASE 1--LUNG VASCULAR CELL HYPOXIC RESPONSER01HL060234 · NHLBI · YALE UNIVERSITY · PI CHOI, AUGUSTINE M, CHOI, MARY E · 1999 to 2017
$5.8M
Deciphering molecular determinants of vascular heterogeneity for organ repairR01HL128158 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI RAFII, SHAHIN · 2014 to 2018
$3.1M
Metabolic dysfunction regulates mitophagy-dependent necroptosis in COPDR01HL132198 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHOI, AUGUSTINE M, CHOI, MARY E · 2017 to 2020
$2.2M
Novel role of RIPK3-dependent necroptosis pathway in lung and kidney fibrosisR01HL133801 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHOI, AUGUSTINE M, CHOI, MARY E · 2017 to 2020
$2.1M
Molecular Determinants of endothelial transition into engraftable hematopoietic cellsR01HL139056 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI RAFII, SHAHIN · 2018 to 2019
$1.4M
Molecular and Translational Oncology ResearchT32CA203702 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLENIS, JOHN, GIANNAKAKOU, PARASKEVI · 2017 to 2021
$1.4M
Noninvasive Biomarkers of Microcirculatory Injury in the Human Kidney AllograftR03DK105270 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI MUTHUKUMAR, THANGAMANI · 2016 to 2017
$170k
NCI NIH HHS T32 CA203702NHLBI NIH HHS R01 HL055330NHLBI NIH HHS R01 HL060234NHLBI NIH HHS R01 HL128158NHLBI NIH HHS R01 HL132198NHLBI NIH HHS R01 HL133801NHLBI NIH HHS R01 HL139056NHLBI NIH HHS R35 HL150809NIDDK NIH HHS R03 DK105270
6 · The paper itself

Abstract

Although kidney parenchymal tissue can be generated in vitro, reconstructing the complex vasculature of the kidney remains a daunting task. The molecular pathways that specify and sustain functional, phenotypic and structural heterogeneity of the kidney vasculature are unknown. Here, we employ high-throughput bulk and single-cell RNA sequencing of the non-lymphatic endothelial cells (ECs) of the kidney to identify the molecular pathways that dictate vascular zonation from embryos to adulthood. We show that the kidney manifests vascular-specific signatures expressing defined transcription factors, ion channels, solute transporters, and angiocrine factors choreographing kidney functions. Notably, the ontology of the glomerulus coincides with induction of unique transcription factors, including Tbx3, Gata5, Prdm1, and Pbx1. Deletion of Tbx3 in ECs results in glomerular hypoplasia, microaneurysms and regressed fenestrations leading to fibrosis in subsets of glomeruli. Deciphering the molecular determinants of kidney vascular signatures lays the foundation for rebuilding nephrons and uncovering the pathogenesis of kidney disorders.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCapillariesCells, CulturedEmbryo, MammalianEndothelial CellsEndothelium, VascularGATA5 Transcription FactorGene Expression ProfilingHumansKidney GlomerulusMaleMiceMice, TransgenicPositive Regulatory Domain I-Binding Factor 1Pre-B-Cell Leukemia Transcription Factor 1Gata5 protein, mouseGATA5 Transcription FactorPbx1 protein, mousePositive Regulatory Domain I-Binding Factor 1Prdm1 protein, mousePre-B-Cell Leukemia Transcription Factor 1T-Box Domain ProteinsTbx3 protein, mouse

Identifiers

PMID31836710
PMCPMC6910926
OpenAlexW2995343362

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.