Evidence map›Paper›PMID 31836708›Full record

ArticleNature communications2019

Functional significance of U2AF1 S34F mutations in lung adenocarcinomas.

Mohammad S Esfahani, Luke J Lee, Young-Jun Jeon, Ryan A Flynn, Henning Stehr, Angela B Hui, Noriko Ishisoko, Eric Kildebeck, Aaron M Newman, Scott V Bratman and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Trial
  2. Article
  3. Role of alternative splicing in cancer progression.Irish journal of medical science · 2026
    Review
  4. Article
  5. Autophagy in the liver.Autophagy reports · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mohammad S EsfahaniStanford Cancer Institute, Stanford University, Stanford, USA.
Luke J LeeStanford Cancer Institute, Stanford University, Stanford, USA.
Young-Jun JeonStanford Cancer Institute, Stanford University, Stanford, USA.
Ryan A FlynnDepartment of Chemistry, Stanford University, Stanford, USA.ORCID http://orcid.org/0000-0001-5013-0442
Henning StehrStanford Cancer Institute, Stanford University, Stanford, USA.
Angela B HuiStanford Cancer Institute, Stanford University, Stanford, USA.
Noriko IshisokoDepartment of Bioengineering, Stanford University, Stanford, USA.
Eric KildebeckDepartment of Pediatrics, Stanford University, Stanford, USA.
Aaron M NewmanInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, USA.ORCID http://orcid.org/0000-0002-1857-8172
Scott V BratmanDepartment of Radiation Oncology, Stanford University, Stanford, USA.ORCID http://orcid.org/0000-0001-8610-4908
Matthew H PorteusDepartment of Pediatrics, Stanford University, Stanford, USA.ORCID http://orcid.org/0000-0002-3850-4648
Howard Y ChangHoward Hughes Medical Institute, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9459-4393
Ash A AlizadehStanford Cancer Institute, Stanford University, Stanford, USA. diehn@stanford.edu.ORCID http://orcid.org/0000-0002-5153-5625
Maximilian DiehnStanford Cancer Institute, Stanford University, Stanford, USA. arasha@stanford.edu.ORCID http://orcid.org/0000-0003-2032-0581

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
LncRNA mechanisms in cancerR35CA209919 · NCI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2016 to 2022
$6.4M
Developing a genomic approach for cancer screeningDP2CA186569 · NCI · STANFORD UNIVERSITY · PI DIEHN, MAXIMILIAN · 2013 to 2013
$2.4M
Cancer Systems Biology Scholars ProgramR25CA180993 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2014 to 2018
$2.2M
Postdoctoral Training in the Radiation ScincesT32CA121940 · NCI · STANFORD UNIVERSITY · PI GRAVES, EDWARD E. · 2007 to 2018
$2.1M
Noninvasive monitoring of lung cancer patients treated with radiotherapyR01CA188298 · NCI · STANFORD UNIVERSITY · PI ALIZADEH, ASH ARASH, DIEHN, MAXIMILIAN · 2015 to 2019
$1.8M
NCI NIH HHS DP2 CA186569NCI NIH HHS R01 CA188298NCI NIH HHS R25 CA180993NCI NIH HHS R35 CA209919NCI NIH HHS T32 CA121940NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

The functional role of U2AF1 mutations in lung adenocarcinomas (LUADs) remains incompletely understood. Here, we report a significant co-occurrence of U2AF1 S34F mutations with ROS1 translocations in LUADs. To characterize this interaction, we profiled effects of S34F on the transcriptome-wide distribution of RNA binding and alternative splicing in cells harboring the ROS1 translocation. Compared to its wild-type counterpart, U2AF1 S34F preferentially binds and modulates splicing of introns containing CAG trinucleotides at their 3' splice junctions. The presence of S34F caused a shift in cross-linking at 3' splice sites, which was significantly associated with alternative splicing of skipped exons. U2AF1 S34F induced expression of genes involved in the epithelial-mesenchymal transition (EMT) and increased tumor cell invasion. Finally, S34F increased splicing of the long over the short SLC34A2-ROS1 isoform, which was also associated with enhanced invasiveness. Taken together, our results suggest a mechanistic interaction between mutant U2AF1 and ROS1 in LUAD.

Indexed as

Adenocarcinoma of LungAlternative SplicingAnimalsBiopsyEpithelial-Mesenchymal TransitionExonsGene Expression Regulation, NeoplasticHumansLungLung NeoplasmsMiceMutationNeoplasm InvasivenessNIH 3T3 CellsOncogene Proteins, FusionProtein IsoformsOncogene Proteins, FusionProtein IsoformsProtein-Tyrosine KinasesProto-Oncogene ProteinsROS1 protein, humanSLC34A2 protein, humanSodium-Phosphate Cotransporter Proteins, Type IIbSplicing Factor U2AFU2AF1 protein, human

Identifiers

PMID31836708
PMCPMC6911043

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.