Evidence map›Paper›PMID 31836707›Full record

ArticleNature communications2019

Engineering protein assemblies with allosteric control via monomer fold-switching.

Luis A Campos, Rajendra Sharma, Sara Alvira, Federico M Ruiz, Beatriz Ibarra-Molero, Mourad Sadqi, Carlos Alfonso, Germán Rivas, Jose M Sanchez-Ruiz, Antonio Romero Garrido and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Slow conformational changes in the rigid and highly stable chymotrypsin inhibitor 2.Protein science : a publication of the Protein Society · 2023
    Article
  4. Article
  5. The stability and dynamics of computationally designed proteins.Protein engineering, design & selection : PEDS · 2022
    Review
  6. Design principles of protein switches.Current opinion in structural biology · 2022
    Review
  7. Protein Assembly by Design.Chemical reviews · 2021
    Review
  8. Article
  9. Article
  10. Artificial Organelles: Towards Adding or Restoring Intracellular Activity.Chembiochem : a European journal of chemical biology · 2021
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Luis A CamposCentro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus de Cantoblanco, 28049, Madrid, Spain.
Rajendra SharmaCentro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus de Cantoblanco, 28049, Madrid, Spain.ORCID http://orcid.org/0000-0003-0516-3258
Sara AlviraCentro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus de Cantoblanco, 28049, Madrid, Spain.
Federico M RuizCentro de Investigaciones Biológicas (CIB-CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.
Beatriz Ibarra-MoleroDepartamento de Química Física, Facultad de Ciencias, Universidad de Granada, Campus Fuentenueva s/n, 18071, Granada, Spain.
Mourad SadqiDepartment of Bioengineering, University of California, 95343, Merced, CA, USA.ORCID http://orcid.org/0000-0003-3553-3408
Carlos AlfonsoCentro de Investigaciones Biológicas (CIB-CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.ORCID http://orcid.org/0000-0001-7165-4800
Germán RivasCentro de Investigaciones Biológicas (CIB-CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.
Jose M Sanchez-RuizDepartamento de Química Física, Facultad de Ciencias, Universidad de Granada, Campus Fuentenueva s/n, 18071, Granada, Spain.
Antonio Romero GarridoCentro de Investigaciones Biológicas (CIB-CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.ORCID http://orcid.org/0000-0002-6990-6973
José M ValpuestaCentro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus de Cantoblanco, 28049, Madrid, Spain.ORCID http://orcid.org/0000-0001-7468-8053
Victor MuñozCentro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus de Cantoblanco, 28049, Madrid, Spain. vmunoz3@ucmerced.edu.ORCID http://orcid.org/0000-0002-5683-1482

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The macromolecular machines of life use allosteric control to self-assemble, dissociate and change shape in response to signals. Despite enormous interest, the design of nanoscale allosteric assemblies has proven tremendously challenging. Here we present a proof of concept of allosteric assembly in which an engineered fold switch on the protein monomer triggers or blocks assembly. Our design is based on the hyper-stable, naturally monomeric protein CI2, a paradigm of simple two-state folding, and the toroidal arrangement with 6-fold symmetry that it only adopts in crystalline form. We engineer CI2 to enable a switch between the native and an alternate, latent fold that self-assembles onto hexagonal toroidal particles by exposing a favorable inter-monomer interface. The assembly is controlled on demand via the competing effects of temperature and a designed short peptide. These findings unveil a remarkable potential for structural metamorphosis in proteins and demonstrate key principles for engineering protein-based nanomachinery.

Indexed as

Protein FoldingAllosteric RegulationCloning, MolecularMolecular Docking SimulationMolecular Dynamics SimulationMutationProtein EngineeringProtein MultimerizationProteinsProtein Structure, SecondaryRecombinant ProteinsSerine ProteasesSerine Proteinase InhibitorsProteinsRecombinant ProteinsSerine ProteasesSerine Proteinase Inhibitors

Identifiers

PMID31836707
PMCPMC6911049

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.