Evidence map›Paper›PMID 31836703›Full record

ArticleNature communications2019

BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila.

Malin Ueberschär, Huazhen Wang, Chun Zhang, Shu Kondo, Tsutomu Aoki, Paul Schedl, Eric C Lai, Jiayu Wen, Qi Dai

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. BEND3 takes the rein.Science China. Life sciences · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. An alternative D. melanogaster 7SK snRNP.BMC molecular and cell biology · 2021
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Malin UeberschärDepartment of Molecular Bioscience, the Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8377-5896
Huazhen WangDepartment of Molecular Bioscience, the Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.
Chun ZhangDepartment of Molecular Bioscience, the Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-9840-2205
Shu KondoLaboratory of Invertebrate Genetics, National Institute of Genetics, Mishima, Japan.
Tsutomu AokiDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
Paul SchedlDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
Eric C LaiDepartment of Developmental Biology, Memorial Sloan Kettering Institute, New York, NY, USA. laie@mskcc.org.ORCID http://orcid.org/0000-0002-8432-5851
Jiayu WenDepartment of Genome Sciences, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. Jiayu.Wen@anu.edu.au.
Qi DaiDepartment of Molecular Bioscience, the Wenner-Gren Institute, Stockholm University, Stockholm, Sweden. qi.dai@su.se.ORCID http://orcid.org/0000-0002-2082-0693

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Selective regulatory and biogenesis mechanisms for microRNAsR01GM083300 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Eric C Lai · 2007 to 2026
$9.8M
Mechanism and regulation of Hu family RNA binding proteins during neural alternative polyadenylationR01NS083833 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LAI, ERIC C · 2014 to 2023
$5.4M
Genetic regulatory mechanism in development and differentiationR35GM126975 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2018 to 2022
$3.0M
BEN factors are conserved CSL co-repressors in Notch-mediated neural developmentR01NS074037 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LAI, ERIC C · 2011 to 2015
$2.1M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM083300NIGMS NIH HHS R35 GM126975NINDS NIH HHS R01 NS074037NINDS NIH HHS R01 NS083833
6 · The paper itself

Abstract

The Drosophila genome encodes three BEN-solo proteins including Insensitive (Insv), Elba1 and Elba2 that possess activities in transcriptional repression and chromatin insulation. A fourth protein-Elba3-bridges Elba1 and Elba2 to form an ELBA complex. Here, we report comprehensive investigation of these proteins in Drosophila embryos. We assess common and distinct binding sites for Insv and ELBA and their genetic interdependencies. While Elba1 and Elba2 binding generally requires the ELBA complex, Elba3 can associate with chromatin independently of Elba1 and Elba2. We further demonstrate that ELBA collaborates with other insulators to regulate developmental patterning. Finally, we find that adjacent gene pairs separated by an ELBA bound sequence become less differentially expressed in ELBA mutants. Transgenic reporters confirm the insulating activity of ELBA- and Insv-bound sites. These findings define ELBA and Insv as general insulator proteins in Drosophila and demonstrate the functional importance of insulators to partition transcription units.

Indexed as

Transcriptional ActivationAnimalsAnimals, Genetically ModifiedCell LineChromatinCo-Repressor ProteinsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianMutationTranscription FactorsBsg25A protein, DrosophilaChromatinCo-Repressor ProteinsDNA-Binding ProteinsDrosophila ProteinsElba2 protein, DrosophilaElba3 protein, DrosophilaInsv protein, DrosophilaTranscription Factors

Identifiers

PMID31836703
PMCPMC6911014

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.