Evidence map›Paper›PMID 31835852›Full record

ArticleInternational journal of molecular sciences2019

Structural and Dynamic Characterizations Highlight the Deleterious Role of SULT1A1 R213H Polymorphism in Substrate Binding.

Raju Dash, Md Chayan Ali, Nayan Dash, Md Abul Kalam Azad, S M Zahid Hosen, Md Abdul Hannan, Il Soo Moon

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 82 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Raju DashDepartment of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea.ORCID 0000-0003-4128-5308
Md Chayan AliDepartment of Biotechnology and Genetic Engineering, Islamic University, Kushtia 7003, Bangladesh.ORCID 0000-0001-5668-2176
Nayan DashDepartment of Computer Science and Engineering, BGC Trust University, Bangladesh, Chittagong 4381, Bangladesh.
Md Abul Kalam AzadDepartment of Biotechnology and Genetic Engineering, Islamic University, Kushtia 7003, Bangladesh.
S M Zahid HosenPancreatic Research Group, South Western Sydney Clinical School, University of New South Wales, and Ingham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Md Abdul HannanDepartment of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea.ORCID 0000-0001-6640-4495
Il Soo MoonDepartment of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea.ORCID 0000-0002-1608-016X
Dongguk University · KRIslamic University · BDBGC Trust University Bangladesh · BDUNSW Sydney · AU

Funding

National Research Foundation of Korea NRF-2018R1A2B6002232 to ISM
6 · The paper itself

Abstract

Sulfotransferase 1A1 (SULT1A1) is responsible for catalyzing various types of endogenous and exogenous compounds. Accumulating data indicates that the polymorphism rs9282861 (R213H) is responsible for inefficient enzymatic activity and associated with cancer progression. To characterize the detailed functional consequences of this mutation behind the loss-of-function of SULT1A1, the present study deployed molecular dynamics simulation to get insights into changes in the conformation and binding energy. The dynamics scenario of SULT1A1 in both wild and mutated types as well as with and without ligand showed that R213H induced local conformational changes, especially in the substrate-binding loop rather than impairing overall stability of the protein structure. The higher conformational changes were observed in the loop3 (residues, 235-263), turning loop conformation to A-helix and B-bridge, which ultimately disrupted the plasticity of the active site. This alteration reduced the binding site volume and hydrophobicity to decrease the binding affinity of the enzyme to substrates, which was highlighted by the MM-PBSA binding energy analysis. These findings highlight the key insights of structural consequences caused by R213H mutation, which would enrich the understanding regarding the role of SULT1A1 mutation in cancer development and also xenobiotics management to individuals in the different treatment stages.

Indexed as

ArylsulfotransferaseBinding SitesComputer SimulationEnzyme StabilityHumansLigandsModels, MolecularMutationPolymorphism, Single NucleotidePrincipal Component AnalysisProtein Structure, SecondarySubstrate SpecificityThermodynamicsArylsulfotransferaseLigandsSULT1A1 protein, humanbinding sitecancermolecular dynamics simulationR213Hrs9282861SULT1A1

Identifiers

PMID31835852
PMCPMC6969939
OpenAlexW2995020674

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.