Evidence map›Paper›PMID 31834974›Full record

ArticleCancer science2020

Identification and characterization of the binding sequences and target genes of p53 lacking the 1st transactivation domain.

Shiori Suzuki, Shuichi Tsutsumi, Yu Chen, Chikako Ozeki, Atsushi Okabe, Tatsuya Kawase, Hiroyuki Aburatani, Rieko Ohki

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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  4. International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shiori SuzukiLaboratory of Fundamental Oncology, National Cancer Center Research Institute, Tokyo, Japan.
Shuichi TsutsumiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Yu ChenLaboratory of Fundamental Oncology, National Cancer Center Research Institute, Tokyo, Japan.
Chikako OzekiLaboratory of Fundamental Oncology, National Cancer Center Research Institute, Tokyo, Japan.
Atsushi OkabeGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Tatsuya KawaseLaboratory of Fundamental Oncology, National Cancer Center Research Institute, Tokyo, Japan.
Hiroyuki AburataniGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Rieko OhkiLaboratory of Fundamental Oncology, National Cancer Center Research Institute, Tokyo, Japan.ORCID https://orcid.org/0000-0002-7775-6653
The University of Tokyo · JPChiba University · JPWaseda University · JP

Funding

Ministry of Education, Culture, Sports, Science and Technology of Japan 19K16732the Ministry of Education, Culture, Sports, Science and Technology of Japan 17H03587the Ministry of Health, Labour and Welfare
6 · The paper itself

Abstract

The tumor suppressor gene p53 encodes a transcriptional activator that has two transactivation domains (TAD) located in its amino terminus. These two TAD can transactivate genes independently, and at least one TAD is required for p53 transactivation function. The 1st TAD (a.a. 1-40) is essential for the induction of numerous classical p53 target genes, while the second TAD (a.a. 41-61) suffices for tumor suppression, although its precise molecular function remains unclear. In this study, we comprehensively identified the sites to which p53 lacking the 1st TAD (Δ1stTAD-p53) binds, as well as its potential target genes. We found that the binding sequences for Δ1stTAD-p53 are divergent and include not only the canonical p53 consensus binding sequences but also sequences similar to those recognized by a number of other known transcription factors. We identified and analyzed the functions of three Δ1stTAD-p53 target genes, PTP4A1, PLK2 and RPS27L. All three genes were induced by both full-length p53 and Δ1stTAD-p53, and were dependent on the transactivation activity of the 2nd TAD. We also found that two of these, PTP4A1 and PLK2, are endoplasmic reticulum (ER) stress-inducible genes. We found that upon ER stress, PTP4A1 suppresses apoptosis while PLK2 induces apoptosis. These results reveal a novel Δ1stTAD-p53 downstream pathway that is dependent on the transcription activation activity of the 2nd TAD.

Indexed as

MutationApoptosisBinding SitesCell Cycle ProteinsEndoplasmic Reticulum StressGene Expression ProfilingGene Expression Regulation, NeoplasticHCT116 CellsHumansMembrane ProteinsOligonucleotide Array Sequence AnalysisProtein BindingProtein DomainsProtein Serine-Threonine KinasesProtein Tyrosine PhosphatasesRibosomal ProteinsCell Cycle ProteinsMembrane ProteinsPLK2 protein, humanProtein Serine-Threonine KinasesProtein Tyrosine PhosphatasesPTP4A1 protein, humanRibosomal ProteinsRPS27L protein, humanTumor Suppressor Protein p53endoplasmic reticulum stressp53p53 isoformSuzukitransactivation domaintumor suppressor

Identifiers

PMID31834974
PMCPMC7004532
OpenAlexW2995201172

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.