Evidence map›Paper›PMID 31834895›Full record

ArticlePloS one2019

Profusion of G-quadruplexes on both subunits of metazoan ribosomes.

Santi Mestre-Fos, Petar I Penev, John Colin Richards, William L Dean, Robert D Gray, Jonathan B Chaires, Loren Dean Williams

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  3. Article
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  6. Review
  7. Review
  8. Human ribosomal G-quadruplexes regulate heme bioavailability.The Journal of biological chemistry · 2020
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Santi Mestre-FosCenter for the Origin of Life, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Petar I PenevCenter for the Origin of Life, Georgia Institute of Technology, Atlanta, Georgia, United States of America.ORCID 0000-0002-9027-3824
John Colin RichardsCenter for the Origin of Life, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
William L DeanJames Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky, United States of America.
Robert D GrayJames Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky, United States of America.
Jonathan B ChairesJames Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky, United States of America.
Loren Dean WilliamsCenter for the Origin of Life, Georgia Institute of Technology, Atlanta, Georgia, United States of America.ORCID 0000-0002-7215-4194
Georgia Institute of Technology · USUniversity of Louisville · US

Funding

Targeting Nucleic Acids with an Integrated Vitural and Actual ScreenR01GM077422 · NIGMS · UNIVERSITY OF LOUISVILLE · PI CHAIRES, JONATHAN B., TRENT, JOHN O · 2007 to 2020
$3.7M
NIGMS NIH HHS R01 GM077422Shared Services Center NASA 80NSSC17K0295Shared Services Center NASA 80NSSC18K1139
6 · The paper itself

Abstract

Mammalian and bird ribosomes are nearly twice the mass of prokaryotic ribosomes in part because of their extraordinarily long rRNA tentacles. Human rRNA tentacles are not fully observable in current three-dimensional structures and their conformations remain to be fully resolved. In previous work we identified sequences that favor G-quadruplexes in silico and in vitro in rRNA tentacles of the human large ribosomal subunit. We demonstrated by experiment that these sequences form G-quadruplexes in vitro. Here, using a more recent motif definition, we report additional G-quadruplex sequences on surfaces of both subunits of the human ribosome. The revised sequence definition reveals expansive arrays of potential G-quadruplex sequences on LSU tentacles. In addition, we demonstrate by a variety of experimental methods that fragments of the small subunit rRNA form G-quadruplexes in vitro. Prior to this report rRNA sequences that form G-quadruplexes were confined to the large ribosomal subunit. Our combined results indicate that the surface of the assembled human ribosome contains numerous sequences capable of forming G-quadruplexes on both ribosomal subunits. The data suggest conversion between duplexes and G-quadruplexes in response to association with proteins, ions, or other RNAs. In some systems it seems likely that the integrated population of RNA G-quadruplexes may be dominated by rRNA, which is the most abundant cellular RNA.

Indexed as

G-QuadruplexesAnimalsBase SequenceHumansNucleic Acid ConformationPhylogenyRibosomesRibosome SubunitsRNA, MessengerRNA, RibosomalSequence HomologyRNA, MessengerRNA, Ribosomal

Identifiers

PMID31834895
PMCPMC6910669
OpenAlexW2995186988

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.