Evidence map›Paper›PMID 31833561›Full record

ArticleBiometrics2020

Learning-based biomarker-assisted rules for optimized clinical benefit under a risk constraint.

Yanqing Wang, Ying-Qi Zhao, Yingye Zheng

Abstract read
In one paragraph

Article in Biometrics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yanqing WangInstitute for Insight, Georgia State University, Atlanta, Georgia.
Ying-Qi ZhaoBiostatistics Program, Fred Hutchinson Cancer Research Center, Seattle, Washington.ORCID 0000-0002-2851-2257
Yingye ZhengBiostatistics Program, Fred Hutchinson Cancer Research Center, Seattle, Washington.ORCID 0000-0002-3078-4200

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
The Early Detection Research Network: Data Management and Coordinating CenterU24CA086368 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RUTH D ETZIONI, Ziding Feng · 2010 to 2026
$75.7M
EDRN--DATA MANAGEMENT AND COORDINATING CENTERU01CA086368 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI FENG, ZIDING · 2000 to 2010
$16.9M
Statistical Methods for Analysis of Tumor Heterogeneity in Genetic EpidemiologyR01CA189532 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSU, LI · 2015 to 2023
$4.2M
Statistical Methods for Prospective Evaluation of BiomarkersR01GM085047 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZHENG, YINGYE · 2009 to 2017
$2.6M
Statistical Methods for Prospective Evaluation of BiomarkersR01CA236558 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZHENG, YINGYE · 2019 to 2024
$1.9M
Statistical Methods for Genetic Epidemiology StudiesR01CA195789 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSU, LI · 2016 to 2019
$1.6M
Statistical methods for healthcare in complex patients with diabetesR01DK108073 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZHAO, YINGQI · 2015 to 2019
$1.5M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
Childhood obesity surveillance using electronic health records dataR21HD086754 · NICHD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZHAO, YINGQI · 2016 to 2017
$494k
NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA189532NCI NIH HHS R01 CA195789NCI NIH HHS R01 CA236558NCI NIH HHS U01 CA086368NCI NIH HHS U24 CA086368NICHD NIH HHS R21 HD086754NIDDK NIH HHS R01 DK108073NIGMS NIH HHS R01 GM085047NIH HHS S10 OD020069
6 · The paper itself

Abstract

Novel biomarkers, in combination with currently available clinical information, have been sought to improve clinical decision making in many branches of medicine, including screening, surveillance, and prognosis. Statistical methods are needed to integrate such diverse information to develop targeted interventions that balance benefit and harm. In the specific setting of disease detection, we propose novel approaches to construct a multiple-marker-based decision rule by directly optimizing a benefit function, while controlling harm at a maximally tolerable level. These new approaches include plug-in and direct-optimization-based algorithms, and they allow for the construction of both nonparametric and parametric rules. A study of asymptotic properties of the proposed estimators is provided. Simulation results demonstrate good clinical utilities for the resulting decision rules under various scenarios. The methods are applied to a biomarker study in prostate cancer surveillance.

Indexed as

AlgorithmsProstatic NeoplasmsBiomarkersComputer SimulationHumansMaleMass ScreeningBiomarkersbiomarkerclinical decision rulesfalse positive fractionmachine learningtrue positive fraction

Identifiers

PMID31833561
PMCPMC7292743

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.