Evidence map›Paper›PMID 31833240›Full record

ArticleMolecular genetics & genomic medicine2020

Targeted regions sequencing identified four novel PNPLA1 mutations in two Chinese families with autosomal recessive congenital ichthyosis.

Liangshan Li, Wenmiao Liu, Yinglei Xu, Miaomiao Li, Qian Tang, Bo Yu, Renmei Cai, Shiguo Liu

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Liangshan LiMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Wenmiao LiuMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Yinglei XuMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Miaomiao LiMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Qian TangMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Bo YuDermatological department, The Affiliated Hospital of Qingdao University, Qingdao, China.
Renmei CaiPrenatal Diagnosis Center, Qingdao Municipal Hospital, Qingdao, China.
Shiguo LiuMedical Genetic Department, The Affiliated Hospital of Qingdao University, Qingdao, China.ORCID 0000-0001-6794-8611
Qingdao University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAutosomal recessive congenital ichthyosis (ARCI) is a rare genetically heterogeneous cutaneous disease predominantly characterized by erythroderma, generalized abnormal scaling of the whole body and a collodion membrane at birth. Numerous causative genes have been demonstrated to be responsible for ARCI including PNPLA1 which can cause ARCI type 10. The objectives of this study are to describe clinical features of three ARCI patients from two Chinese unrelated families and to identify the underlying causative mutations.

methodsGenomic DNA was extracted from peripheral venous blood obtained from the two Chinese ARCI families in Shandong province. Subsequently, targeted regions sequencing (TRS) followed by Sanger sequencing was conducted to identify and validate the likely pathogenic mutations of the ARCI families.

resultsGenetic analyses revealed four novel PNPLA1 variants that are predicted to be probably to lead to ARCI in three patients of two families. Patient 1 in one family was in compound heterozygous status for c.604delC/p.Arg202Glyfs*27 and c.820dupC/p.Arg274Profs*15, whereas c.738_742delinsCCCACAGATCCTGC/ p.Gly247_Tyr248delinsProGlnIleLeuHis, and c.816dupC/p.Arg274Profs*15 were found in patient 2 and 3 of the other family. In addition, these variants cosegregate in the two pedigrees and are all within highly conserved regions of the PNPLA1 protein, which indicate that the four mutations are likely pathogenic.

conclusionOur findings not only broaden the mutational spectrum of PNPLA1, but also contribute to establishing genotype-phenotype correlations for different forms of ARCI.

Indexed as

Genes, RecessiveMutationAcyltransferasesChildConserved SequenceFemaleGenetic TestingHumansIchthyosisLipaseMaleMiddle AgedPedigreePhenotypePhospholipasesSequence Analysis, DNAAcyltransferasesLipasePhospholipasesPNPLA1 protein, humanautosomal recessive congenital ichthyosis (ARCI)genetic analysesPNPLA1Sanger sequencingtargeted regions sequencing (TRS)

Identifiers

PMID31833240
PMCPMC7005637
OpenAlexW2995197279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.