Evidence map›Paper›PMID 31832840›Full record

ArticleCurrent microbiology2020

Draft Genome Sequence of Thermophilic Bacillus sp. TYF-LIM-B05 Directly Producing Ethanol from Various Carbon Sources Including Lignocellulose.

Lulu Fan, Min Li, Yao Li, Xiaojun Fan, Yuxiang Liu, Yongkang Lv

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. A Genomic Perspective on the Potential of Wild-Type Rumen BacteriumInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lulu FanCollege of Environmental Science and Engineering, Taiyuan University of Technology, No. 209 of University Street, Yuci District, Jinzhong, 030600, Shanxi, China.
Min LiCollege of Biomedical Engineering, Taiyuan University of Technology, No. 209 of University Street, Yuci District, Jinzhong, 030600, Shanxi, China.
Yao LiCollege of Biomedical Engineering, Taiyuan University of Technology, No. 209 of University Street, Yuci District, Jinzhong, 030600, Shanxi, China.
Xiaojun FanCollege of Environmental Science and Engineering, Taiyuan University of Technology, No. 209 of University Street, Yuci District, Jinzhong, 030600, Shanxi, China. fanxiaojun@tyut.edu.cn.
Yuxiang LiuCollege of Environmental Science and Engineering, Taiyuan University of Technology, No. 209 of University Street, Yuci District, Jinzhong, 030600, Shanxi, China. yuxiangliu2002@126.com.
Yongkang LvKey Laboratory of Coal Science and Technology, Ministry of Education and Shanxi Province, Taiyuan University of Technology, Taiyuan, 030024, Shanxi, China.
Taiyuan University of Technology · CN

Funding

Scientific Research Foundation for Returned Scholars of Shanxi Province 20180008ShanXi Science and Technology Department (CN) 201703D121044
6 · The paper itself

Abstract

Bacillus sp. TYF-LIM-B05, which is isolated from spoilage vinegar, is resistant to high temperature, high concentrated alcohol, acid, and salt, and can produce ethanol from mono-, di-, polysaccharide, and complex biomass as the sole carbon source. Thus, this strain is a potential candidate for consolidated bioprocessing (CBP) of fermenting lignocellulose to ethanol in a single step. To provide insight into the key enzymes involved in lignocellulose degradation and ethanol production, a draft genome of TYF-LIM-B05 was developed in this study. The results indicated that 348 genes are related to carbohydrate transport and metabolism according to the clusters of orthologous groups of proteins and annotated 187 CAZy domains from a total of 61 different families. The presence of genes encoding laccases, quinone oxidoreductases/reductases, and aryl-alcohol dehydrogenases further implies that TYF-LIM-B05 has the potential to degrade lignin. Remarkably, this strain has the ability to catalyze the oxidative decarboxylation of pyruvate to acetyl-CoA by pyruvate dehydrogenase complexes. The genomic information provided in this study will help researchers to better understand the mechanisms of the lignocellulose degradation and ethanol production pathway in thermophiles.

Indexed as

Genome, BacterialAcetic AcidBacillusBiomassCarbonComputational BiologyEthanolFermentationLigninPhylogenyAcetic AcidCarbonEthanolLigninlignocellulose

Identifiers

PMID31832840
OpenAlexW2995682101

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.