Evidence map›Paper›PMID 31832774›Full record

ArticlePlanta2019

The Arabidopsis cryptochrome 2 I404F mutant is hypersensitive and shows flavin reduction even in the absence of light.

Galileo Estopare Araguirang, Nils Niemann, Stephan Kiontke, Maike Eckel, Maribel L Dionisio-Sese, Alfred Batschauer

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Galileo Estopare AraguirangGraduate School, University of the Philippines Los Baños, College, 4031, Laguna, Philippines.
Nils NiemannDepartment of Plant Physiology and Photobiology, Faculty of Biology, Philipps-University Marburg, 35032, Marburg, Germany.
Stephan KiontkeDepartment of Plant Physiology and Photobiology, Faculty of Biology, Philipps-University Marburg, 35032, Marburg, Germany.
Maike EckelDepartment of Plant Physiology and Photobiology, Faculty of Biology, Philipps-University Marburg, 35032, Marburg, Germany.
Maribel L Dionisio-SeseGraduate School, University of the Philippines Los Baños, College, 4031, Laguna, Philippines.
Alfred BatschauerDepartment of Plant Physiology and Photobiology, Faculty of Biology, Philipps-University Marburg, 35032, Marburg, Germany. batschau@staff.uni-marburg.de.ORCID http://orcid.org/0000-0002-4544-476X
Philipps University of Marburg · DEUniversity of the Philippines Los Baños · PH

Funding

Deutsche Forschungsgemeinschaft BA 985/14-1
6 · The paper itself

Abstract

MAIN

conclusionThe cryptochrome photoreceptor mutant cry2I404F exhibits hyperactivity in the dark, hypersensitivity in different light conditions, and in contrast to the wild-type protein, its flavin chromophore is reducible even in the absence of light. Plant cryptochromes (cry) are blue-light photoreceptors involved in multiple signaling pathways and various photomorphogenic responses. One biologically hyperactive mutant of a plant cryptochrome that was previously characterized is Arabidopsis cry1L407F (Exner et al. in Plant Physiol 154:1633-1645, 2010). Protein sequence alignments of different cryptochromes revealed that L407 in cry1 corresponds to I404 in cry2. Point mutation of Ile to Phe in cry2 in this position created a novel mutant. The present study provided a baseline data on the elucidation of the properties of cry2I404F. This mutant was still able to bind ATP-triggering conformational changes, as confirmed by partial tryptic digestion and thermo-FAD assays. Surprisingly, the FAD cofactor of cry2I404F was reduced by the addition of reductant even in the absence of light. In vivo, cry2I404F exhibited a cop phenotype in the dark and hypersensitivity to various light conditions compared to cry2 wild type. Overall, these data suggest that the hypersensitivity to red and blue light and hyperactivity of this novel mutant in the dark can be mostly accounted to structural alterations brought forth by the Ile to Phe mutation at position 404 that allows reduction of the flavin chromophore even in the absence of light.

Indexed as

ArabidopsisArabidopsis ProteinsCryptochromesFlavinsLightModels, MolecularMutagenesis, Site-DirectedMutationPhenotypeProtein ConformationSignal TransductionTranscription FactorsArabidopsis ProteinsCRY1 protein, ArabidopsisCRY2 protein, ArabidopsisCryptochromesFlavinsTranscription FactorsATP-bindingCryptochrome photocyclePhotobiologyPhotoreceptorPlant biochemistryStructural changes

Identifiers

PMID31832774
OpenAlexW2996265926

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.