ArticleApplications in plant sciences2019
The genome of
Article in Applications in plant sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Purification, Amino Acid Sequence, and Structural Features of a Novel Expansin-like A from the Seeds of Canihua (International journal of molecular sciences · 2026Article
- Quinoa as a naturally stress-resistant crop: current status and future promises.Stress biology · 2026Review
- The genome of Chenopodium ficifolium: developing genetic resources and a diploid model system for allotetraploid quinoa.G3 (Bethesda, Md.) · 2025Article
- A pangenome reveals LTR repeat dynamics as a major driver of genome evolution in Chenopodium.The plant genome · 2025Article
- Genomic variation induced by a low concentration of ethyl methanesulfonate (EMS) in quinoa 'Longli-4' variety.Botanical studies · 2024Article
- North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa).Scientific reports · 2024Article
- Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated.Frontiers in plant science · 2024Article
- A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes.Communications biology · 2023Article
- A chromosome-scale reference of Chenopodium watsonii helps elucidate relationships within the North American A-genome Chenopodium species and with quinoa.The plant genome · 2023Article
- First Report onJournal of fungi (Basel, Switzerland) · 2023Article
- Genomic Sequence of CanadianPlants (Basel, Switzerland) · 2023Article
- Genomic Variation Underlying the Breeding Selection of Quinoa Varieties Longli-4 and CA3-1 in China.International journal of molecular sciences · 2022Article
- Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot "Djulis" (Chenopodium formosanum).Genome biology and evolution · 2022Article
- Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms.Molecular biology and evolution · 2022Article
- Developing Chenopodium ficifolium as a potential B genome diploid model system for genetic characterization and improvement of allotetraploid quinoa (Chenopodium quinoa).BMC plant biology · 2021Article
- A multilayered cross-species analysis of GRAS transcription factors uncovered their functional networks in plant adaptation to the environment.Journal of advanced research · 2021Article
- A Chromosome-Scale Assembly of the Garden Orach (Frontiers in plant science · 2020Article
- The genome ofApplications in plant sciences · 2019Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premiseCañahua is a semi-domesticated crop grown in high-altitude regions of the Andes. It is an A-genome diploid (2
methodsThe reference assembly was developed using a combination of short- and long-read sequencing techniques, including multiple rounds of Hi-C-based proximity-guided assembly.
resultsThe final assembly of the ~363-Mbp genome consists of 4633 scaffolds, with 96.6% of the assembly contained in nine scaffolds representing the nine haploid chromosomes of the species. Repetitive element analysis classified 52.3% of the assembly as repetitive, with the most common repeat identified as long terminal repeat retrotransposons. MAKER annotation of the final assembly yielded 22,832 putative gene models. DISCUSSION: When compared with quinoa, strong patterns of synteny support the hypothesis that cañahua is a close A-genome diploid relative, and thus potentially a simplified model diploid species for genetic analysis and improvement of quinoa. Resequencing and phylogenetic analysis of a diversity panel of cañahua accessions suggests that coordinated efforts are needed to enhance genetic diversity conservation within ex situ germplasm collections.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.