Evidence map›Paper›PMID 31831736›Full record

ArticleNature communications2019

Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization.

Osamu Iwasaki, Hideki Tanizawa, Kyoung-Dong Kim, Andrew Kossenkov, Timothy Nacarelli, Sanki Tashiro, Sonali Majumdar, Louise C Showe, Rugang Zhang, Ken-Ichi Noma

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Review
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  6. Review
  7. Article
  8. Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  9. Liquid condensates: a new barrier to loop extrusion?Cellular and molecular life sciences : CMLS · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Osamu IwasakiInstitute of Molecular Biology, University of Oregon, Eugene, OR, 97403, USA.ORCID http://orcid.org/0000-0002-1205-6963
Hideki TanizawaInstitute of Molecular Biology, University of Oregon, Eugene, OR, 97403, USA.ORCID http://orcid.org/0000-0002-2573-2473
Kyoung-Dong KimDepartment of Systems Biotechnology, Chung-Ang University, Anseong, 17456, Republic of Korea.
Andrew KossenkovThe Wistar Institute, Philadelphia, PA, 19104, USA.
Timothy NacarelliThe Wistar Institute, Philadelphia, PA, 19104, USA.
Sanki TashiroInstitute of Molecular Biology, University of Oregon, Eugene, OR, 97403, USA.
Sonali MajumdarThe Wistar Institute, Philadelphia, PA, 19104, USA.
Louise C ShoweThe Wistar Institute, Philadelphia, PA, 19104, USA.
Rugang ZhangThe Wistar Institute, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-7255-2360
Ken-Ichi NomaInstitute of Molecular Biology, University of Oregon, Eugene, OR, 97403, USA. noma@uoregon.edu.ORCID http://orcid.org/0000-0002-5187-6788
The Wistar Institute · USUniversity of Oregon · USChung-Ang University · KR

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI ADAMS, PETER D. · 2008 to 2022
$28.3M
TRAINING PROGRAM IN BASIC CANCER RESEARCHT32CA009171 · NCI · WISTAR INSTITUTE · PI Alessandro Gardini · 1985 to 2026
$15.3M
Role of BRCA1 Pathway in Regulating Oncogene-Induced SenescenceR01CA160331 · NCI · WISTAR INSTITUTE · PI ZHANG, RUGANG · 2012 to 2021
$4.0M
Condensin connects 3D genome organization, chromosomal segregation, andgene regulation via its interactions with transcription-related factors.R01GM124195 · NIGMS · WISTAR INSTITUTE · PI NOMA, KENICHI · 2017 to 2020
$1.8M
Integrative Approach to Comprehensive Analysis of High Throughput Data on a Cancer Center LevelR50CA211199 · NCI · WISTAR INSTITUTE · PI Andrew V Kossenkov · 2016 to 2026
$1.6M
NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA160331NCI NIH HHS R50 CA211199NCI NIH HHS T32 CA009171NIA NIH HHS P01 AG031862NIGMS NIH HHS R01 GM124195
6 · The paper itself

Abstract

Senescence is induced by various stimuli such as oncogene expression and telomere shortening, referred to as oncogene-induced senescence (OIS) and replicative senescence (RS), respectively, and accompanied by global transcriptional alterations and 3D genome reorganization. Here, we demonstrate that the human condensin II complex participates in senescence via gene regulation and reorganization of euchromatic A and heterochromatic B compartments. Both OIS and RS are accompanied by A-to-B and B-to-A compartmental transitions, the latter of which occur more frequently and are undergone by 14% (430 Mb) of the human genome. Mechanistically, condensin is enriched in A compartments and implicated in B-to-A transitions. The full activation of senescence genes (SASP genes and p53 targets) requires condensin; its depletion impairs senescence markers. This study describes that condensin reinforces euchromatic A compartments and promotes B-to-A transitions, both of which are coupled to optimal expression of senescence genes, thereby allowing condensin to contribute to senescent processes.

Indexed as

Adenosine TriphosphatasesCell Cycle ProteinsCell LineCellular SenescenceChromatinDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, NeoplasticGene Knockdown TechniquesGenomicsHumansMultiprotein ComplexesNuclear ProteinsOncogenesPromoter Regions, GeneticTelomere ShorteningAdenosine TriphosphatasesCell Cycle ProteinsChromatincondensin complexesDNA-Binding ProteinsMultiprotein ComplexesNCAPH2 protein, humanNuclear ProteinsTumor Suppressor Protein p53

Identifiers

PMID31831736
PMCPMC6908677
OpenAlexW2995325699

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.