Evidence map›Paper›PMID 31830544›Full record

ArticleJournal of neuroscience methods2020

A GICA-TVGL framework to study sex differences in resting state fMRI dynamic connectivity.

Biao Cai, Gemeng Zhang, Aiying Zhang, Wenxing Hu, Julia M Stephen, Tony W Wilson, Vince D Calhoun, Yu-Ping Wang

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Biao CaiBiomedical Engineering Department, Tulane University, New Orleans, LA, USA.
Gemeng ZhangBiomedical Engineering Department, Tulane University, New Orleans, LA, USA.
Aiying ZhangBiomedical Engineering Department, Tulane University, New Orleans, LA, USA.
Wenxing HuBiomedical Engineering Department, Tulane University, New Orleans, LA, USA.
Julia M StephenThe Mind Research Network, Albuquerque, NM, USA.
Tony W WilsonDepartment of Neurological Sciences, University of Nebraska Medical Center (UNMC), Omaha, NE, USA.
Vince D CalhounTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS) (Georgia State University, Georgia Institute of Technology, Emory University), Atlanta, GA 30030, USA.
Yu-Ping WangBiomedical Engineering Department, Tulane University, New Orleans, LA, USA.

Funding

Trans-omics Integration of Multi-omics Studies for OsteoporosisU19AG055373 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI HONG-WEN DENG · 2017 to 2026
$24.3M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
Neurophysiological markers of HAND and the impact of aging: Evidence from MEGR01MH103220 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI WILSON, TONY W · 2014 to 2018
$2.5M
Integration of brain imaging with genomic and epigenomic dataR01MH104680 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI CALHOUN, VINCE D, DENG, HONG-WEN · 2014 to 2017
$2.1M
Integration of fMRI imaging, genomics, network and biological knowledgeR01MH107354 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2015 to 2018
$1.9M
Integration of multiscale genomic data for comprehensive analysis of complex diseR01GM109068 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2014 to 2018
$1.6M
Integration of brain imaging and multi-omics data for improved diagnosis and prediction of mental disordersR56MH124925 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2021 to 2022
$1.1M
NIA NIH HHS U19 AG055373NIBIB NIH HHS R01 EB020407NIGMS NIH HHS R01 GM109068NIMH NIH HHS R01 MH103220NIMH NIH HHS R01 MH104680NIMH NIH HHS R01 MH107354NIMH NIH HHS R56 MH124925
6 · The paper itself

Abstract

backgroundFunctional magnetic resonance imaging (fMRI) has been implemented widely to study brain connectivity. In particular, time-varying connectivity analysis has emerged as an important measure to uncover essential knowledge within the network. On the other hand, independent component analysis (ICA) has served as a powerful tool to preprocess fMRI data before performing network analysis. Together, they may lead to novel findings.

methodsWe propose a new framework (GICA-TVGL) that combines group ICA (GICA) with time-varying graphical LASSO (TVGL) to improve the power of analyzing functional connectivity (FNC) changes, which is then applied for neuro-developmental study. To investigate the performance of our proposed approach, we apply it to capture dynamic FNC using both the Philadelphia Neurodevelopmental Cohort (PNC) and the Pediatric Imaging, Neurocognition, and Genetics (PING) datasets.

resultsOur results indicate that females and males in young adult group possess substantial difference related to visual network. In addition, some other consistent conclusions have been reached by using these two datasets. Furthermore, the GICA-TVGL model indicated that females had a higher probability to stay in a stable state. Males had a higher tendency to remain in a globally disconnected mode. COMPARISON WITH EXISTING

methodThe performance of sliding window approach is largely affected by the window size selection. In addition, it also assumes temporal locality hypothesis.

conclusionOur proposed framework provides a feasible method to investigate brain dynamics and has the potential to become a widely used tool in neuroimaging studies.

Indexed as

Magnetic Resonance ImagingSex CharacteristicsBrainBrain MappingChildFemaleHumansMaleNeuroimagingYoung AdultDynamic functional connectivityGICA-TVGL frameworkResting state fMRISex difference

Identifiers

PMID31830544
PMCPMC10187053

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.