Evidence map›Paper›PMID 31829804›Full record

ArticleJournal of applied physiology (Bethesda, Md. : 1985)2020

Skeletal muscle transcriptional networks linked to type I myofiber grouping in Parkinson's disease.

Kaleen M Lavin, Stuart C Sealfon, Merry-Lynn N McDonald, Brandon M Roberts, Katarzyna Wilk, Venugopalan D Nair, Yongchao Ge, Preeti Lakshman Kumar, Samuel T Windham, Marcas M Bamman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of applied physiology (Bethesda, Md. : 1985), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

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  14. Mechanisms of exercise as a preventative measure to muscle wasting.American journal of physiology. Cell physiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Kaleen M LavinDepartment of Cell, Developmental, and Integrative Biology, University of Alabama at Birmingham, Birmingham, Alabama.ORCID 0000-0003-1426-8174
Stuart C SealfonDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York.
Merry-Lynn N McDonaldDepartment of Genetics, University of Alabama at Birmingham, Birmingham, Alabama.
Brandon M RobertsDepartment of Cell, Developmental, and Integrative Biology, University of Alabama at Birmingham, Birmingham, Alabama.
Katarzyna WilkDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York.
Venugopalan D NairDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York.
Yongchao GeDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York.
Preeti Lakshman KumarDepartment of Genetics, University of Alabama at Birmingham, Birmingham, Alabama.
Samuel T WindhamDepartment of Surgery, University of Alabama at Birmingham, Birmingham, Alabama.
Marcas M BammanDepartment of Cell, Developmental, and Integrative Biology, University of Alabama at Birmingham, Birmingham, Alabama.ORCID 0000-0002-5017-5453
University of Alabama at Birmingham · USIcahn School of Medicine at Mount Sinai · US

Funding

PAGES: Physical Activity Genomics, Epigenomics/transcriptomics SiteU24DK112331 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI STUART C. SEALFON, Martin John Walsh · 2017 to 2026
$18.5M
Rehabilitation Research Resource to Enhance Clinical Trials (ReACT)P2CHD086851 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BAMMAN, MARCAS M · 2015 to 2019
$7.1M
Interdisciplinary Training in Pathobiology and Rehabilitation Medicine.T32HD071866 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JAMES RIMMER, Anna E. Thalacker-Mercer · 2012 to 2026
$4.8M
MUSCLE PLASTICITY TRAINING /DETRAINING IN OLDER ADULTSR01AG017896 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BAMMAN, MARCAS M · 2001 to 2011
$2.6M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NIA NIH HHS R01 AG017896NICHD NIH HHS P2C HD086851NICHD NIH HHS T32 HD071866NIDDK NIH HHS U24 DK112331NIH HHS S10 OD026880
6 · The paper itself

Abstract

Parkinson's disease (PD) is a common neurodegenerative disorder impacting cognition, movement, and quality of life in >10 million individuals worldwide. We recently characterized and quantified a skeletal muscle pathology in PD represented by exaggerated type I myofiber grouping presumed to result from denervation-reinnervation processes. Our previous findings indicated that impaired neuromuscular junction integrity may be involved in type I grouping, which is associated with excessive motor unit activation during weight-bearing tasks. In this study, we performed transcriptional profiling to test the hypothesis that type I grouping severity would link to distinct gene expression networks. We generated transcriptome-wide poly(A) RNA-Seq data from skeletal muscle of individuals with PD [

Indexed as

Gene Regulatory NetworksParkinson DiseaseAdultAgedFemaleHumansMaleMuscle Fibers, Slow-TwitchMuscle, SkeletalNeuromuscular JunctionQuality of LifeRNA-SeqTranscriptomemuscle histologyneuromuscular junctionParkinson’s diseaseRNA-Seqtype I groupingweighted gene correlation network analysis

Identifiers

PMID31829804
PMCPMC7052589
OpenAlexW2998582618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.