Evidence map›Paper›PMID 31829624›Full record

ArticleACS chemical biology2020

Structural Basis for Finding OG Lesions and Avoiding Undamaged G by the DNA Glycosylase MutY.

L Peyton Russelburg, Valerie L O'Shea Murray, Merve Demir, Kyle R Knutsen, Sonia L Sehgal, Sheng Cao, Sheila S David, Martin P Horvath

Abstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Structural Basis for Nucleobase Activation by the Adenine DNA Glycosylase MutY.Chembiochem : a European journal of chemical biology · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. ISAntibiotics (Basel, Switzerland) · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Direct Measurement of 8OGbioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

L Peyton RusselburgSchool of Biological Sciences , University of Utah , 257 South 1400 East , Salt Lake City , Utah 84112 , United States.
Valerie L O'Shea MurrayDepartment of Chemistry , University of California , Davis , California 95616 , United States.
Merve DemirDepartment of Chemistry , University of California , Davis , California 95616 , United States.
Kyle R KnutsenSchool of Biological Sciences , University of Utah , 257 South 1400 East , Salt Lake City , Utah 84112 , United States.
Sonia L SehgalSchool of Biological Sciences , University of Utah , 257 South 1400 East , Salt Lake City , Utah 84112 , United States.
Sheng CaoDepartment of Chemistry , University of California , Davis , California 95616 , United States.
Sheila S DavidDepartment of Chemistry , University of California , Davis , California 95616 , United States.ORCID 0000-0001-5873-7935
Martin P HorvathSchool of Biological Sciences , University of Utah , 257 South 1400 East , Salt Lake City , Utah 84112 , United States.ORCID 0000-0003-3057-9722

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
RECOGNITION AND REPAIR OF MISMATCHED DNA BY MUTYR01CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 2000 to 2025
$5.6M
MULTIDISCIPLINARY CANCER RESEARCH TRAINING PROGRAMT32CA093247 · NCI · UNIVERSITY OF UTAH · PI AYER, DONALD E · 2002 to 2011
$5.2M
PREDOCTORAL TRAINING PROGRAM IN BIOLOGICAL CHEMISTRYT32GM008537 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1993 to 2005
$1.4M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
G/A MISMATCH RECOGNITION AND REPAIR BY E COLI MUTYR29CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 1995 to 1999
–
NCI NIH HHS R01 CA067985NCI NIH HHS R29 CA067985NCI NIH HHS T32 CA093247NIGMS NIH HHS P30 GM124169NIGMS NIH HHS T32 GM008537NIH HHS S10 OD018483
6 · The paper itself

Abstract

The adenine glycosylase MutY selectively initiates repair of OG:A lesions and, by comparison, avoids G:A mispairs. The ability to distinguish these closely related substrates relies on the C-terminal domain of MutY, which structurally resembles MutT. To understand the mechanism for substrate specificity, we crystallized MutY in complex with DNA containing G across from the high-affinity azaribose transition state analogue. Our structure shows that G is accommodated by the OG site and highlights the role of a serine residue in OG versus G discrimination. The functional significance of Ser308 and its neighboring residues was evaluated by mutational analysis, revealing the critical importance of a β loop in the C-terminal domain for mutation suppression in cells, and biochemical performance

Indexed as

Amino Acid SequenceBase Pair MismatchCatalytic DomainDNADNA GlycosylasesDNA RepairGuanineKineticsMolecular ConformationStructure-Activity RelationshipSubstrate SpecificityTargeted Gene RepairDNADNA GlycosylasesGuaninemutY adenine glycosylase

Identifiers

PMID31829624
PMCPMC7069122

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.