Evidence map›Paper›PMID 31829168›Full record

ArticleRespiratory research2019

Targeted regulation of fibroblast state by CRISPR-mediated CEBPA expression.

Wei Liu, Jeffrey A Meridew, Aja Aravamudhan, Giovanni Ligresti, Daniel J Tschumperlin, Qi Tan

Open access · goldAbstract read
In one paragraph

Article in Respiratory research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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  11. G9a promotes inflammation inAnnals of translational medicine · 2022
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  14. Review
  15. Article
  16. Spontaneous Lung Fibrosis Resolution Reveals Novel Antifibrotic Regulators.American journal of respiratory cell and molecular biology · 2021
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Wei LiuEmergency Department, First Hospital of China Medical University, Shenyang, China.
Jeffrey A MeridewDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, Mayo Clinic College of Medicine and Science, 200 1st St SW, Rochester, MN, 55905, USA.
Aja AravamudhanDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, Mayo Clinic College of Medicine and Science, 200 1st St SW, Rochester, MN, 55905, USA.
Giovanni LigrestiDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, Mayo Clinic College of Medicine and Science, 200 1st St SW, Rochester, MN, 55905, USA.
Daniel J TschumperlinDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, Mayo Clinic College of Medicine and Science, 200 1st St SW, Rochester, MN, 55905, USA.
Qi TanDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, Mayo Clinic College of Medicine and Science, 200 1st St SW, Rochester, MN, 55905, USA. tan.qi@mayo.edu.ORCID http://orcid.org/0000-0001-9504-5604
Mayo Clinic · USBoston University · US

Funding

Mechanobiology of Lung FibrosisR01HL092961 · NHLBI · MAYO CLINIC ROCHESTER · PI Daniel J. Tschumperlin · 2009 to 2026
$8.0M
Epigenetic regulation of pulmonary fibrosisR01HL142596 · NHLBI · MAYO CLINIC ROCHESTER · PI Giovanni Ligresti · 2018 to 2026
$2.9M
NHLBI NIH HHS R01 HL092961NHLBI NIH HHS R01 HL142596
6 · The paper itself

Abstract

backgroundFibroblasts regulate tissue homeostasis and the balance between tissue repair and fibrosis. CCAAT/enhancer-binding protein alpha (CEBPA) is a key transcription factor that regulates adipogenesis. CEBPA has been shown to be essential for lung maturation, and deficiency of CEBPA expression leads to abnormal lung architecture. However, its specific role in lung fibroblast regulation and fibrosis has not yet been elucidated.

methodsLung fibroblast CEBPA expression, pro-fibrotic and lipofibroblast gene expression were assessed by qRT-PCR. CEBPA gain and loss of function experiments were carried out to evaluate the role of CEBPA in human lung fibroblast activation with and without TGF-β1 treatment. Adipogenesis assay was used to measure the adiopogenic potential of lung fibroblasts. Finally, CRISPR activation system was used to enhance endogenous CEBPA expression.

resultsWe found that CEBPA gene expression is significantly decreased in IPF-derived fibroblasts compared to normal lung fibroblasts. CEBPA knockdown in normal human lung fibroblasts enhanced fibroblast pro-fibrotic activation and ECM production. CEBPA over-expression by transient transfection in IPF-derived fibroblasts significantly reduced pro-fibrotic gene expression, ECM deposition and αSMA expression and promoted the formation of lipid droplets measured by Oil Red O staining and increased lipofibroblast gene expression. Inhibition of the histone methyl transferase G9a enhanced CEBPA expression, and the anti-fibrotic effects of G9a inhibition were partially mediated by CEBPA expression. Finally, targeted CRISPR-mediated activation of CEBPA resulted in fibroblasts switching from fibrogenic to lipofibroblast states.

conclusionsCEBPA expression is reduced in human IPF fibroblasts and its deficiency reduces adipogenic potential and promotes fibrogenic activation. CEBPA expression can be rescued via an inhibitor of epigenetic repression or by targeted CRISPR activation, leading to reduced fibrogenic activation.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGene EditingAdipogenesisCase-Control StudiesCCAAT-Enhancer-Binding ProteinsCells, CulturedCRISPR-Associated Protein 9FibroblastsFibrosisGene Expression RegulationHumansIdiopathic Pulmonary FibrosisLungPhenotypeRNA InterferenceCCAAT-Enhancer-Binding ProteinsCEBPA protein, humanCRISPR-Associated Protein 9Transforming Growth Factor beta1AdipogenesisCEBPACRISPR activationFibroblast activationLipofibroblastLung fibrosis

Identifiers

PMID31829168
PMCPMC6907247
OpenAlexW2995758459

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.