Evidence map›Paper›PMID 31828775›Full record

ArticleThe Journal of animal ecology2020

Less is more: On-board lossy compression of accelerometer data increases biologging capacity.

Rascha J M Nuijten, Theo Gerrits, Judy Shamoun-Baranes, Bart A Nolet

Abstract read
In one paragraph

Article in The Journal of animal ecology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rascha J M NuijtenDepartment of Animal Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands.ORCID 0000-0002-1469-4328
Theo Gerritsmadebytheo, Nijmegen, The Netherlands.
Judy Shamoun-BaranesDepartment of Theoretical and Computational Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-1652-7646
Bart A NoletDepartment of Animal Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands.ORCID 0000-0002-7437-4879

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GPS-tracking devices have been used in combination with a wide range of additional sensors to study animal behaviour, physiology and interaction with their environment. Tri-axial accelerometers allow researchers to remotely infer the behaviour of individuals, at all places and times. Collection of accelerometer data is relatively cheap in terms of energy usage, but the amount of raw data collected generally requires much storage space and is particularly demanding in terms of energy needed for data transmission. Here, we propose compressing the raw accelerometer (ACC) data into summary statistics within the tracking device (before transmission) to reduce data size, as a means to overcome limitations in storage and energy capacity. We explored this type of lossy data compression in the accelerometer data of tagged Bewick's swans Cygnus columbianus bewickii collected in spring 2017. Using software settings in which bouts of 2 s of both raw ACC data and summary statistics were collected in parallel but with different bout intervals to keep total data size comparable, we created the opportunity for a direct comparison of time budgets derived by the two data collection methods. We found that the data compression in our case yielded a six times reduction in data size per bout, and concurrent, similar decreases in storage and energy use of the device. We show that with the same accuracy of the behavioural classification, the freed memory and energy of the device can be used to increase the monitoring effort, resulting in a more detailed representation of the individuals' time budget. Rare and/or short behaviours, such as daily roost flights, were picked up significantly more when collecting summary statistics instead of raw ACC data (but note differences in sampling rate). Such level of detail can be of essential importance, for instance to make a reliable estimate of the energy budgets of individuals. In conclusion, we argue that this type of lossy data compression can be a well-considered choice in study situations where limitations in energy and storage space of the device pose a problem. Ultimately, these developments can allow for long-term and nearly continuous remote monitoring of the behaviour of free-ranging animals.

Indexed as

AccelerometryBehavior, AnimalAnimalsSeasonsBewick's swanbiotelemetryGPS trackingremote behavioural observationssummary statistics

Identifiers

PMID31828775
PMCPMC7004173

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.