Evidence map›Paper›PMID 31828326›Full record

ArticleNucleic acids research2020

APE1 senses DNA single-strand breaks for repair and signaling.

Yunfeng Lin, Jude Raj, Jia Li, Anh Ha, Md Akram Hossain, Christine Richardson, Pinku Mukherjee, Shan Yan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
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  5. Mechanisms of DNA repair and mutagenesis induced by acetaldehyde, acrolein, aristolochic acids, and vinyl chloride.Journal of environmental science and health. Part C, Toxicology and carcinogenesis · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yunfeng LinDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Jude RajDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Jia LiDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Anh HaDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Md Akram HossainDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Christine RichardsonDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Pinku MukherjeeDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Shan YanDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
University of North Carolina at Charlotte · US

Funding

Mechanism of APE1 in DNA damage responseR01CA225637 · NCI · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI YAN, SHAN · 2018 to 2022
$1.9M
Role of APE2 in DNA damage responseR15GM114713 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI YAN, SHAN · 2015 to 2015
$363k
Role of TopBP1 partner WDR18 in DNA damage checkpoint and DNA replicationR15GM101571 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI YAN, SHAN · 2012 to 2012
$297k
Acquisition of a Microscale Thermophoresis InstrumentS10OD026970 · OD · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI NESMELOVA, IRINA V · 2019 to 2019
$143k
NCI NIH HHS R01 CA225637NIGMS NIH HHS R15 GM101571NIGMS NIH HHS R15 GM114713NIH HHS S10 OD026970
6 · The paper itself

Abstract

DNA single-strand breaks (SSBs) represent the most abundant type of DNA damage. Unrepaired SSBs impair DNA replication and transcription, leading to cancer and neurodegenerative disorders. Although PARP1 and XRCC1 are implicated in the SSB repair pathway, it remains unclear how SSB repair and SSB signaling pathways are coordinated and regulated. Using Xenopus egg extract and in vitro reconstitution systems, here we show that SSBs are first sensed by APE1 to initiate 3'-5' SSB end resection, followed by APE2 recruitment to continue SSB end resection. Notably, APE1's exonuclease activity is critical for SSB repair and SSB signaling pathways. An APE1 exonuclease-deficient mutant identified in somatic tissue from a cancer patient highlighted the significance of APE1 exonuclease activity in cancer etiology. In addition, APE1 interacts with APE2 and PCNA, although PCNA is dispensable for APE1's exonuclease activity. Taken together, we propose a two-step APE1/APE2-mediated mechanism for SSB end resection that couples DNA damage response with SSB repair in a eukaryotic system.

Indexed as

AnimalsDNA-(Apurinic or Apyrimidinic Site) LyaseDNA Breaks, Single-StrandedDNA DamageDNA RepairDNA ReplicationEndonucleasesHumansMultifunctional EnzymesSignal TransductionXenopusXenopus ProteinsAPEX1 protein, humanapex1 protein, XenopusAPEX2 protein, humanapex2 protein, XenopusDNA-(Apurinic or Apyrimidinic Site) LyaseEndonucleasesMultifunctional EnzymesXenopus Proteins

Identifiers

PMID31828326
PMCPMC7038996
OpenAlexW2995000181

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.