Evidence map›Paper›PMID 31827275›Full record

ArticleEuropean journal of human genetics : EJHG2020

Exome sequencing in infants with congenital hearing impairment: a population-based cohort study.

Lilian Downie, Jane Halliday, Rachel Burt, Sebastian Lunke, Elly Lynch, Melissa Martyn, Zeffie Poulakis, Clara Gaff, Valerie Sung, Melissa Wake and 9 more

Erratum issuedOpen access · bronzeAbstract readEvaluation Study
In one paragraph

Article in European journal of human genetics : EJHG, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Parental experience of whole genome sequencing for children with sensorineural hearing loss.International journal of qualitative studies on health and well-being · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Functional Profiling ofCirculation. Genomic and precision medicine · 2025
    Article
  8. Article
  9. Article
  10. Article
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  12. Article
  13. Article
  14. Article
  15. Article
  16. medRxiv : the preprint server for health sciences · 2023
    Article
  17. Article
  18. [Genetics of pediatric hearing loss].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Lilian DownieVictorian Clinical Genetics Services, Melbourne, VIC, Australia.
Jane HallidayMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Rachel BurtMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Sebastian LunkeVictorian Clinical Genetics Services, Melbourne, VIC, Australia.ORCID http://orcid.org/0000-0002-7168-0723
Elly LynchVictorian Clinical Genetics Services, Melbourne, VIC, Australia.
Melissa MartynMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Zeffie PoulakisMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Clara GaffDepartment of Paediatrics, University of Melbourne, Melbourne, VIC, Australia.
Valerie SungMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Melissa WakeMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Matthew F HunterMonash Health, Melbourne, VIC, Australia.
Kerryn SaundersMonash Health, Melbourne, VIC, Australia.
Elizabeth RoseMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Sharon LewisMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Anna JarmolowiczVictorian Clinical Genetics Services, Melbourne, VIC, Australia.
Dean PhelanVictorian Clinical Genetics Services, Melbourne, VIC, Australia.
Heidi L RehmMassachusetts General Hospital and the Broad Institute of MIT and Harvard, Boston, MA, USA.
Melbourne Genomics Health Alliance
David J AmorVictorian Clinical Genetics Services, Melbourne, VIC, Australia. david.amor@mcri.edu.au.ORCID http://orcid.org/0000-0001-7191-8511
The University of Melbourne · AURoyal Children's Hospital · AUVictorian Clinical Genetics Services · AUBroad Institute · USMonash Health · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital hearing impairment (HI) is the most common sensory impairment and can be isolated or part of a syndrome. Diagnosis through newborn hearing screening and management through early intervention, hearing aids and cochlear implantation is well established in the Australian setting; however understanding the genetic basis of congenital HI has been missing. This population-derived cohort comprised infants with moderate-profound bilateral HI born in the 2016-2017 calendar years, detected through newborn hearing screening. Participants were recruited through an integrated paediatric, otolaryngology and genetics HI clinic and offered whole exome sequencing (WES) on a HiSeq4000 or NextSeq500 (Illumina) platform with a targeted average sequencing depth of 100x and chromosome microarray on the Illumina Infinium core exome-24v1.2 platform. Of those approached, 68% (106/156) consented to participate. The rate of genetic diagnosis was 56% (59/106), significantly higher than standard of care (GJB2/6 sequencing only), 21% (22/106). There were clinical implications for the 106 participants: 36% required no further screening, 9% had tailored screening initiated, 2% were offered treatment and 4% had informed care for a complex neurodevelopmental syndrome. WES in this cohort demonstrates the range of diagnoses associated with congenital HI and confirms the genetic heterogeneity of congenital HI. The high diagnostic yield and clinical implications emphasises the need for genomic sequencing to become standard of care.

Indexed as

Exome SequencingFemaleGenetic TestingHearing LossHumansInfantInfant, NewbornMaleNeonatal ScreeningSensitivity and Specificity

Identifiers

PMID31827275
PMCPMC7171096
OpenAlexW2996150099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.